RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NIFKQ9BYG3 293 aaKnown RBP20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 VPS16Q9H269 839 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 ST6GALNAC4Q9H4F1 302 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 EMSYQ7Z589 1322 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 A0A1W2PQC6 194 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 SFI1A8K8P3 1242 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 FAM155AB1AL88 458 aaPredicted RBP20■□□□□ 0.79
CCDC88C-203ENST00000389856 K7ENM7 598 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 PES1O00541 588 aaKnown RBP20■□□□□ 0.79
CCDC88C-203ENST00000389856 NKRFO15226 690 aaKnown RBP eCLIP20■□□□□ 0.79
CCDC88C-203ENST00000389856 SLU7O95391 586 aaKnown RBP20■□□□□ 0.79
CCDC88C-203ENST00000389856 GH1P01241 217 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 TCF7P36402 384 aaPredicted RBP20■□□□□ 0.79
CCDC88C-203ENST00000389856 TM4SF4P48230 202 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 SNRPFP62306 86 aaKnown RBP20■□□□□ 0.79
CCDC88C-203ENST00000389856 PPP2R3AQ06190 1150 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 NFIL3Q16649 462 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 MAN2A1Q16706 1144 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 C17orf99Q6UX52 265 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 PAXIP1Q6ZW49 1069 aaPredicted RBP20■□□□□ 0.79
CCDC88C-203ENST00000389856 PLPPR4Q7Z2D5 763 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 CNGA4Q8IV77 575 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 ZNF784Q8NCA9 323 aaPredicted RBP20■□□□□ 0.79
CCDC88C-203ENST00000389856 SOCS4Q8WXH5 440 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 IQCDQ96DY2 449 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 IFT74Q96LB3 600 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 NOC4LQ9BVI4 516 aaKnown RBP20■□□□□ 0.79
CCDC88C-203ENST00000389856 ABHD16BQ9H3Z7 469 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 EXOC7Q9UPT5 735 aa20■□□□□ 0.79
CCDC88C-203ENST00000389856 SORBS3O60504 671 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 PRPF6O94906 941 aaKnown RBP19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 CASP5P51878 434 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 POLGP54098 1239 aaPredicted RBP19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 NPEPPSP55786 919 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 UBXN1Q04323 297 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 MAP2K5Q13163 448 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 ADAM9Q13443 819 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 LRRC55Q6ZSA7 311 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 ZC3H3Q8IXZ2 948 aaKnown RBP19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 SYCP3Q8IZU3 236 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 DAW1Q8N136 415 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 PDCL2Q8N4E4 241 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 SLC7A3Q8WY07 619 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 GLG1Q92896 1179 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 ACCSQ96QU6 501 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 GPR20Q99678 358 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 TINF2Q9BSI4 451 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 FGFBP2Q9BYJ0 223 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 SMARCAD1Q9H4L7 1026 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 BCAS3Q9H6U6 928 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 PPP2R2CQ9Y2T4 447 aa19.99■□□□□ 0.79
CCDC88C-203ENST00000389856 SLC16A3O15427 465 aaKnown RBP19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 LGR5O75473 907 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 STBD1O95210 358 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 ARIH2O95376 493 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 FECHP22830 423 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 NMT1P30419 496 aaKnown RBP19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 REXO1L1PQ8IX06 675 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 SPIRE2Q8WWL2 714 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 BBXQ8WY36 941 aaPredicted RBP19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 EMID1Q96A84 441 aaPredicted RBP19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 JPH2Q9BR39 696 aaPredicted RBP19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 GBP3Q9H0R5 595 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 METTL14Q9HCE5 456 aaKnown RBP19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 GAS2O43903 313 aaKnown RBP19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 NR2F2P24468 414 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 RGS2P41220 211 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 MARSP56192 900 aaKnown RBP19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 NCBP1Q09161 790 aaKnown RBP19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 NOGQ13253 232 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 MYBPC2Q14324 1141 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 PPP2R5AQ15172 486 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 MTERF2Q49AM1 385 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 MORN1Q5T089 497 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 MAEAQ7L5Y9 396 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 FAM184BQ9ULE4 1060 aa19.98■□□□□ 0.79
CCDC88C-203ENST00000389856 CA12O43570 354 aa19.97■□□□□ 0.79
CCDC88C-203ENST00000389856 HOXC6P09630 235 aa19.97■□□□□ 0.79
CCDC88C-203ENST00000389856 NCKAP1LP55160 1127 aa19.97■□□□□ 0.79
CCDC88C-203ENST00000389856 VWA3BQ502W6 1294 aa19.97■□□□□ 0.79
CCDC88C-203ENST00000389856 IQSEC1Q6DN90 963 aa19.97■□□□□ 0.79
CCDC88C-203ENST00000389856 TAPT1Q6NXT6 567 aa19.97■□□□□ 0.79
CCDC88C-203ENST00000389856 TRMT1LQ7Z2T5 733 aaKnown RBP19.97■□□□□ 0.79
CCDC88C-203ENST00000389856 NUP58Q9BVL2 599 aa19.97■□□□□ 0.79
CCDC88C-203ENST00000389856 CCDC94Q9BW85 323 aaPredicted RBP19.97■□□□□ 0.79
CCDC88C-203ENST00000389856 TEX33O43247 280 aa19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 NR3C1P04150 777 aa19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 EPB41P11171 864 aaKnown RBP19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 PEX3P56589 373 aa19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 EMC2Q15006 297 aa19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 SYT10Q6XYQ8 523 aa19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 FRMD5Q7Z6J6 570 aa19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 RETREG2Q8NC44 543 aa19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 FIZ1Q96SL8 496 aa19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 KMT5AQ9NQR1 393 aa19.96■□□□□ 0.79
CCDC88C-203ENST00000389856 TMEM150BA6NC51 233 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 MFAP3LO75121 409 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 PPP1R37O75864 691 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 GTF2BQ00403 316 aa19.95■□□□□ 0.78
CCDC88C-203ENST00000389856 TBC1D8BQ0IIM8 1120 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms