RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 RIPOR3Q96MK2 946 aa7.28□□□□□ -1.24
VPS29-210ENST00000552130 SMOC1Q9H4F8 434 aa7.28□□□□□ -1.24
VPS29-210ENST00000552130 LRP2BPQ9P2M1 347 aa7.28□□□□□ -1.24
VPS29-210ENST00000552130 PPARGC1AQ9UBK2 798 aaKnown RBP7.28□□□□□ -1.24
VPS29-210ENST00000552130 PCDHA4Q9UN74 947 aa7.28□□□□□ -1.24
VPS29-210ENST00000552130 CYP8B1Q9UNU6 501 aa7.28□□□□□ -1.24
VPS29-210ENST00000552130 FAM86C2PA6NEL3 165 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 B4E1Z4 1266 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 C19orf81C9J6K1 198 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 ETV2O00321 342 aaPredicted RBP7.27□□□□□ -1.25
VPS29-210ENST00000552130 PCDHGA12O60330 932 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 IDEP14735 1019 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 SMARCA1P28370 1054 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 PPM1AP35813 382 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 PEX19P40855 299 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 PLIN5Q00G26 463 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 CACNB2Q08289 660 aaPredicted RBP7.27□□□□□ -1.25
VPS29-210ENST00000552130 INPP5AQ14642 412 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 PLCB4Q15147 1175 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 CCNG2Q16589 344 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 SLC45A4Q5BKX6 768 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 DGKKQ5KSL6 1271 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 IQCEQ6IPM2 695 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 CCDC129Q6ZRS4 1044 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 KIF18BQ86Y91 864 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 OR2C3Q8N628 320 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 ARL6IP6Q8N6S5 226 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 MFSD2AQ8NA29 543 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 SMC1BQ8NDV3 1235 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 AFAP1L1Q8TED9 768 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 USP13Q92995 863 aaPredicted RBP7.27□□□□□ -1.25
VPS29-210ENST00000552130 GAL3ST3Q96A11 431 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 C20orf173Q96LM9 149 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 MAGEB10Q96LZ2 347 aaPredicted RBP7.27□□□□□ -1.25
VPS29-210ENST00000552130 ORAI3Q9BRQ5 295 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 EPB41L4BQ9H329 900 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 ZCCHC17Q9NP64 241 aaKnown RBP7.27□□□□□ -1.25
VPS29-210ENST00000552130 DCP1AQ9NPI6 582 aaPredicted RBP7.27□□□□□ -1.25
VPS29-210ENST00000552130 RTEL1Q9NZ71 1219 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 CDC23Q9UJX2 597 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 SMG5Q9UPR3 1016 aaKnown RBP7.27□□□□□ -1.25
VPS29-210ENST00000552130 PCDHGA9Q9Y5G4 932 aaKnown RBP7.27□□□□□ -1.25
VPS29-210ENST00000552130 PCDHGA8Q9Y5G5 932 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 PCDHGA7Q9Y5G6 932 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 PCDHGA6Q9Y5G7 932 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 PCDHGA3Q9Y5H0 932 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 PCDHGA2Q9Y5H1 932 aa7.27□□□□□ -1.25
VPS29-210ENST00000552130 TCRBV16S1A1N1A0A5B0 115 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 TSPY2A6NKD2 308 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 RBAK-RBAKDNI3L0D1 243 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 ULK1O75385 1050 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 HTR3BO95264 441 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 TSPY3P0CV98 308 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 TSPY8P0CW00 308 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 NME1P15531 152 aaKnown RBP7.26□□□□□ -1.25
VPS29-210ENST00000552130 XPAP23025 273 aaPredicted RBP7.26□□□□□ -1.25
VPS29-210ENST00000552130 AKAP5P24588 427 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 ELF1P32519 619 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 KRT9P35527 623 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 TSPY1Q01534 308 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 SEMA5AQ13591 1074 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 NKG7Q16617 165 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 KIAA0753Q2KHM9 967 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 CCDC38Q502W7 563 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 RILPL1Q5EBL4 403 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 OVOS1Q6IE37 1185 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 LRFN4Q6PJG9 635 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 TMCO3Q6UWJ1 677 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 PDZD4Q76G19 769 aaPredicted RBP7.26□□□□□ -1.25
VPS29-210ENST00000552130 PTRH1Q86Y79 214 aaKnown RBP7.26□□□□□ -1.25
VPS29-210ENST00000552130 NXPE1Q8N323 547 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 LSM14AQ8ND56 463 aaKnown RBP7.26□□□□□ -1.25
VPS29-210ENST00000552130 ABHD4Q8TB40 342 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 ELMO3Q96BJ8 720 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 VMP1Q96GC9 406 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 RMDN3Q96TC7 470 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 ACO2Q99798 780 aaKnown RBP7.26□□□□□ -1.25
VPS29-210ENST00000552130 LSM14BQ9BX40 385 aaKnown RBP7.26□□□□□ -1.25
VPS29-210ENST00000552130 LMAN2LQ9H0V9 348 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 C14orf119Q9NWQ9 140 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 GPRC5BQ9NZH0 403 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 ZNF214Q9UL59 606 aaPredicted RBP7.26□□□□□ -1.25
VPS29-210ENST00000552130 POLHQ9Y253 713 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 TMEM98Q9Y2Y6 226 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 SYNRGQ9UMZ2 1314 aa7.26□□□□□ -1.25
VPS29-210ENST00000552130 TRIM64CA6NLI5 447 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 CHL1O00533 1208 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 DDX58O95786 925 aaKnown RBP7.25□□□□□ -1.25
VPS29-210ENST00000552130 HPXP02790 462 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 ESR1P03372 595 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 GYS1P13807 737 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 LSSP48449 732 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 BLMHQ13867 455 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 MLECQ14165 292 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 CCDC158Q5M9N0 1113 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 CIAPIN1Q6FI81 312 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 ZCCHC8Q6NZY4 707 aaKnown RBP7.25□□□□□ -1.25
VPS29-210ENST00000552130 ZNF449Q6P9G9 518 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 BRSK2Q8IWQ3 736 aa7.25□□□□□ -1.25
VPS29-210ENST00000552130 COLGALT2Q8IYK4 626 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms