RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 VAV3Q9UKW4 847 aa21.84■■□□□ 1.09
USP40-207ENST00000450940 C5orf67F2Z3F1 127 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 GPR182O15218 404 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 VTNP04004 478 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 RB1P06400 928 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 TMOD1P28289 359 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 CLCN3P51790 818 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 ST3GAL1Q11201 340 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 KIZQ2M2Z5 673 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 XKR3Q5GH77 459 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 HAS1Q92839 578 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 ADAMTS10Q9H324 1103 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 ST3GAL5Q9UNP4 418 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 GINS2Q9Y248 185 aa21.83■■□□□ 1.09
USP40-207ENST00000450940 BRWD1Q9NSI6 2320 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 MGEA5O60502 916 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 STAG3L1P0CL83 205 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 KRT2P35908 639 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 BMPR1AP36894 532 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 NFX1Q12986 1120 aaKnown RBP21.82■■□□□ 1.08
USP40-207ENST00000450940 NR5A1Q13285 461 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 C8orf34Q49A92 452 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 MRPL38Q96DV4 380 aaKnown RBP21.82■■□□□ 1.08
USP40-207ENST00000450940 OSMRQ99650 979 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 RGS18Q9NS28 235 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 LIMCH1Q9UPQ0 1083 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 RWDD3Q9Y3V2 267 aa21.82■■□□□ 1.08
USP40-207ENST00000450940 IGKV6-21A0A0C4DH24 114 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 EML1O00423 815 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 CCNT1O60563 726 aaKnown RBP21.81■■□□□ 1.08
USP40-207ENST00000450940 JAK2O60674 1132 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 MMP1P03956 469 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 SARSP49591 514 aaKnown RBP21.81■■□□□ 1.08
USP40-207ENST00000450940 NLRP11P59045 1033 aaKnown RBP21.81■■□□□ 1.08
USP40-207ENST00000450940 TBC1D8BQ0IIM8 1120 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 GPM6BQ13491 265 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 SKIV2LQ15477 1246 aaKnown RBP21.81■■□□□ 1.08
USP40-207ENST00000450940 AAK1Q2M2I8 961 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 FAM228AQ86W67 206 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 CMTR2Q8IYT2 770 aaKnown RBP21.81■■□□□ 1.08
USP40-207ENST00000450940 LRRC71Q8N4P6 559 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 MAP7D2Q96T17 732 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 KIF2CQ99661 725 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 BRMS1Q9HCU9 246 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 C1orf112Q9NSG2 853 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 XIRP2A4UGR9 3374 aa21.81■■□□□ 1.08
USP40-207ENST00000450940 FNDC1Q4ZHG4 1894 aaPredicted RBP21.81■■□□□ 1.08
USP40-207ENST00000450940 KIAA1671Q9BY89 1806 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 NCOR1O75376 2440 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 FAM205CA6NFA0 338 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 C9IYK1 514 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 BMP1P13497 986 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 PSMC5P62195 406 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 FAM189BP81408 668 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 TFF2Q03403 129 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 BTG3Q14201 252 aaPredicted RBP21.8■■□□□ 1.08
USP40-207ENST00000450940 DSC3Q14574 896 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 PTPROQ16827 1216 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 SLC24A5Q71RS6 500 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 HLA-CQ95604 372 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 ADAM2Q99965 735 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 RNF216Q9NWF9 866 aaPredicted RBP21.8■■□□□ 1.08
USP40-207ENST00000450940 AKT3Q9Y243 479 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 ATG2AQ2TAZ0 1938 aa21.8■■□□□ 1.08
USP40-207ENST00000450940 EIF4BP23588 611 aaKnown RBP21.79■■□□□ 1.08
USP40-207ENST00000450940 ANO5Q75V66 913 aa21.79■■□□□ 1.08
USP40-207ENST00000450940 PPP1R16BQ96T49 567 aa21.79■■□□□ 1.08
USP40-207ENST00000450940 SEPT9Q9UHD8 586 aaPredicted RBP21.79■■□□□ 1.08
USP40-207ENST00000450940 TCF20Q9UGU0 1960 aaKnown RBP21.78■■□□□ 1.08
USP40-207ENST00000450940 BTBD18B2RXH4 712 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 MAFO75444 373 aaPredicted RBP21.78■■□□□ 1.08
USP40-207ENST00000450940 P4HBP07237 508 aaKnown RBP21.78■■□□□ 1.08
USP40-207ENST00000450940 CTNNB1P35222 781 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 QARSP47897 775 aaKnown RBP21.78■■□□□ 1.08
USP40-207ENST00000450940 GPC3P51654 580 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 CDC42EP1Q00587 391 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 SPIRE1Q08AE8 756 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 MTERF2Q49AM1 385 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 POTEDQ86YR6 584 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 SLFN12Q8IYM2 578 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 BANK1Q8NDB2 785 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 LLPHQ9BRT6 129 aaKnown RBP21.78■■□□□ 1.08
USP40-207ENST00000450940 C11orf84Q9BUA3 381 aaPredicted RBP21.78■■□□□ 1.08
USP40-207ENST00000450940 PLVAPQ9BX97 442 aa21.78■■□□□ 1.08
USP40-207ENST00000450940 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.77■■□□□ 1.08
USP40-207ENST00000450940 DENND3A2RUS2 1198 aa21.77■■□□□ 1.08
USP40-207ENST00000450940 TMEM150BA6NC51 233 aa21.77■■□□□ 1.08
USP40-207ENST00000450940 DDX11L8A8MPP1 907 aa21.77■■□□□ 1.08
USP40-207ENST00000450940 DKC1O60832 514 aaKnown RBP eCLIP21.77■■□□□ 1.08
USP40-207ENST00000450940 EPHA7Q15375 998 aa21.77■■□□□ 1.08
USP40-207ENST00000450940 DIS3L2Q8IYB7 885 aaKnown RBP21.77■■□□□ 1.08
USP40-207ENST00000450940 P2RX5Q93086 422 aa21.77■■□□□ 1.08
USP40-207ENST00000450940 LMAN2LQ9H0V9 348 aa21.77■■□□□ 1.08
USP40-207ENST00000450940 ELAC1Q9H777 363 aaKnown RBP21.77■■□□□ 1.08
USP40-207ENST00000450940 LRFN2Q9ULH4 789 aa21.77■■□□□ 1.08
USP40-207ENST00000450940 PCDHB7Q9Y5E2 793 aa21.77■■□□□ 1.08
USP40-207ENST00000450940 MRPL42Q9Y6G3 142 aaKnown RBP21.77■■□□□ 1.08
USP40-207ENST00000450940 BDP1A6H8Y1 2624 aa21.76■■□□□ 1.07
USP40-207ENST00000450940 MYO7AQ13402 2215 aa21.76■■□□□ 1.07
USP40-207ENST00000450940 BAG4O95429 457 aaKnown RBP21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms