RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 SESN3P58005 492 aa9.04□□□□□ -0.96
VPS36-201ENST00000378060 CACNB1Q02641 598 aaPredicted RBP9.04□□□□□ -0.96
VPS36-201ENST00000378060 DCAF15Q66K64 600 aa9.04□□□□□ -0.96
VPS36-201ENST00000378060 ATG9AQ7Z3C6 839 aa9.04□□□□□ -0.96
VPS36-201ENST00000378060 PDCD7Q8N8D1 485 aaKnown RBP9.04□□□□□ -0.96
VPS36-201ENST00000378060 CCSER1Q9C0I3 900 aa9.04□□□□□ -0.96
VPS36-201ENST00000378060 TAF1DQ9H5J8 278 aaPredicted RBP9.04□□□□□ -0.96
VPS36-201ENST00000378060 USP17L3A6NCW0 530 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 USP17L4A6NCW7 530 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 GSG1L2A8MUP6 293 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 CASP1P29466 404 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 RPS6KA2Q15349 733 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 NUGGCQ68CJ6 796 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 PPP1R18Q6NYC8 613 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 USP17L1Q7RTZ2 530 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 NIM1KQ8IY84 436 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 TTC16Q8NEE8 873 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 DYNLL2Q96FJ2 89 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 CDHR1Q96JP9 859 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 PLA2G12BQ9BX93 195 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 ANO3Q9BYT9 981 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 PSD3Q9NYI0 1048 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 THEGQ9P2T0 379 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 KIF28PB7ZC32 967 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 SLCO1A2P46721 670 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 TMED2Q15363 201 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 E2F4Q16254 413 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 KCTD1Q719H9 257 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 HACE1Q8IYU2 909 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 SPATA4Q8NEY3 305 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 DPF2Q92785 391 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 BHMT2Q9H2M3 363 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 KMT5AQ9NQR1 393 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 ZNF277Q9NRM2 450 aaPredicted RBP9.03□□□□□ -0.96
VPS36-201ENST00000378060 GINS2Q9Y248 185 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 FAM187AA6NFU0 413 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 ORC4O43929 436 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 DCTN3O75935 186 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 MMEP08473 750 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 CA4P22748 312 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 VSNL1P62760 191 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 PPP2R2AP63151 447 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 PDE1BQ01064 536 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 KCNH2Q12809 1159 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 FAM133BQ5BKY9 247 aaKnown RBP9.03□□□□□ -0.96
VPS36-201ENST00000378060 NYAP1Q6ZVC0 841 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 SLC7A3Q8WY07 619 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 RIOK1Q9BRS2 568 aaKnown RBP9.03□□□□□ -0.96
VPS36-201ENST00000378060 MTFR1LQ9H019 292 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 MLXIPQ9HAP2 919 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 PFDN4Q9NQP4 134 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 PI4KBQ9UBF8 816 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 ADD3Q9UEY8 706 aaKnown RBP9.03□□□□□ -0.96
VPS36-201ENST00000378060 MAD1L1Q9Y6D9 718 aa9.03□□□□□ -0.96
VPS36-201ENST00000378060 SNX1Q13596 522 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 TAF11Q15544 211 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 CC2D2BQ6DHV5 1058 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 FOXP4Q8IVH2 680 aaPredicted RBP9.02□□□□□ -0.96
VPS36-201ENST00000378060 PDIK1LQ8N165 341 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 NLGN2Q8NFZ4 835 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 MORC4Q8TE76 937 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 ATP6V1G3Q96LB4 118 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 FAM20AQ96MK3 541 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 ELAC2Q9BQ52 826 aaKnown RBP9.02□□□□□ -0.96
VPS36-201ENST00000378060 TMEM47Q9BQJ4 181 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 SCOCQ9UIL1 159 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 PPP1R9AQ9ULJ8 1098 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 SNX12Q9UMY4 172 aa9.02□□□□□ -0.96
VPS36-201ENST00000378060 MCF2LO15068 1137 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 SMIM24O75264 130 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 LMNAP02545 664 aaKnown RBP9.02□□□□□ -0.97
VPS36-201ENST00000378060 ANXA13P27216 316 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 SLC16A2P36021 539 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 PEX19P40855 299 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 GRM4Q14833 912 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 NR1I3Q14994 352 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 TAF12Q16514 161 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 CCDC93Q567U6 631 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 SYDE2Q5VT97 1194 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 TTBK2Q6IQ55 1244 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 DNAJC24Q6P3W2 148 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 CENPUQ71F23 418 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 RAD54LQ92698 747 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 CNKSR1Q969H4 720 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.02□□□□□ -0.974e-7■□□□□ 9
VPS36-201ENST00000378060 FGFR1OP2Q9NVK5 253 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 DNAJC12Q9UKB3 198 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 SCINQ9Y6U3 715 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 MEIS1O00470 390 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 KLRK1P26718 216 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 TMOD1P28289 359 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 DRP2Q13474 957 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 SPARCL1Q14515 664 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 FAM160B1Q5W0V3 765 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 SGIP1Q9BQI5 828 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 PITPNM3Q9BZ71 974 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 TRIM4Q9C037 500 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 BARHL2Q9NY43 387 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 SEL1LQ9UBV2 794 aa9.02□□□□□ -0.97
VPS36-201ENST00000378060 LCMT1Q9UIC8 334 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms