RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 AFG1LQ8WV93 481 aa18.57■□□□□ 0.56
SHANK1-201ENST00000293441 SCINQ9Y6U3 715 aa18.57■□□□□ 0.56
SHANK1-201ENST00000293441 EPHB4P54760 987 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 KRT76Q01546 638 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 TOB2Q14106 344 aaPredicted RBP18.56■□□□□ 0.56
SHANK1-201ENST00000293441 OXER1Q8TDS5 423 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 DDX27Q96GQ7 796 aaKnown RBP18.56■□□□□ 0.56
SHANK1-201ENST00000293441 KPNA2P52292 529 aaKnown RBP18.56■□□□□ 0.56
SHANK1-201ENST00000293441 PSPC1Q8WXF1 523 aaKnown RBP18.56■□□□□ 0.56
SHANK1-201ENST00000293441 FAF2Q96CS3 445 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 HOXA7P31268 230 aaPredicted RBP18.56■□□□□ 0.56
SHANK1-201ENST00000293441 SLC7A5Q01650 507 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 NFIXQ14938 502 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 LY9Q9HBG7 655 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 PLS3P13797 630 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 RFC1P35251 1148 aaPredicted RBP18.56■□□□□ 0.56
SHANK1-201ENST00000293441 GRM4Q14833 912 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 VSTM4Q8IW00 320 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 CPSF1Q10570 1443 aaKnown RBP18.56■□□□□ 0.56
SHANK1-201ENST00000293441 SUN1O94901 812 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 TRIM42Q8IWZ5 723 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 PDCD6IPQ8WUM4 868 aaKnown RBP18.56■□□□□ 0.56
SHANK1-201ENST00000293441 MED4Q9NPJ6 270 aa18.56■□□□□ 0.56
SHANK1-201ENST00000293441 WDR91A4D1P6 747 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 NR3C1P04150 777 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 DHX9Q08211 1270 aaKnown RBP18.55■□□□□ 0.56
SHANK1-201ENST00000293441 SP8Q8IXZ3 490 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 POLR3FQ9H1D9 316 aaPredicted RBP18.55■□□□□ 0.56
SHANK1-201ENST00000293441 TRIM49BA6NDI0 452 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 DR1Q01658 176 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 HP1BP3Q5SSJ5 553 aaPredicted RBP18.55■□□□□ 0.56
SHANK1-201ENST00000293441 NDUFAF2Q8N183 169 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 RABGGTAQ92696 567 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 TTC25Q96NG3 672 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 SUDS3Q9H7L9 328 aaPredicted RBP18.55■□□□□ 0.56
SHANK1-201ENST00000293441 ACAD9Q9H845 621 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 GINM1Q9NU53 330 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 ADAMTS1Q9UHI8 967 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 GSTA4O15217 222 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 NT5C2P49902 561 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 GAS2L3Q86XJ1 694 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 PLA2R1Q13018 1463 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 DPYSL4O14531 572 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 BZW1Q7L1Q6 419 aaKnown RBP18.55■□□□□ 0.56
SHANK1-201ENST00000293441 ADAM22Q9P0K1 906 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 ANAPC7Q9UJX3 599 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 GNGT2O14610 69 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 HIP1RO75146 1068 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 CLTAP09496 248 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 TMEM270Q6UE05 265 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 RNF217Q8TC41 542 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 ELP3Q9H9T3 547 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 GLI2P10070 1586 aa18.55■□□□□ 0.56
SHANK1-201ENST00000293441 A0A0G2JLW4 131 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 POTEFA5A3E0 1075 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 POTEIP0CG38 1075 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 COASYQ13057 564 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 ALKBH5Q6P6C2 394 aaKnown RBP18.54■□□□□ 0.56
SHANK1-201ENST00000293441 POTEGQ6S5H5 508 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 POTEEQ6S8J3 1075 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 CYFIP1Q7L576 1253 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 XXYLT1Q8NBI6 393 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 RWDD2BP57060 319 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 PPP1R18Q6NYC8 613 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 KIAA1586Q9HCI6 787 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 G3BP2Q9UN86 482 aaKnown RBP18.54■□□□□ 0.56
SHANK1-201ENST00000293441 EXOC1LA0A1B0GW35 172 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 RECQLP46063 649 aaPredicted RBP18.54■□□□□ 0.56
SHANK1-201ENST00000293441 QRICH1Q2TAL8 776 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 CRB1P82279 1406 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 SLMAPQ14BN4 828 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 PYROXD1Q8WU10 500 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 FAM20AQ96MK3 541 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 QARSP47897 775 aaKnown RBP18.54■□□□□ 0.56
SHANK1-201ENST00000293441 HACD3Q9P035 362 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 TJP3O95049 919 aa18.54■□□□□ 0.56
SHANK1-201ENST00000293441 ZNF500O60304 480 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-201ENST00000293441 HSPA6P17066 643 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 SFNP31947 248 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 PRPF38AQ8NAV1 312 aaKnown RBP18.53■□□□□ 0.56
SHANK1-201ENST00000293441 FGD4Q96M96 766 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 FAM8A1Q9UBU6 413 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 HPCAL4Q9UM19 191 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 UBE4BO95155 1302 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 CREB3O43889 395 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 PIDD1Q9HB75 910 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 F8W8V4 182 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 P4HBP07237 508 aaKnown RBP18.53■□□□□ 0.56
SHANK1-201ENST00000293441 PPARGP37231 505 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-201ENST00000293441 C2orf40Q9H1Z8 148 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 STK36Q9NRP7 1315 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 NSUN2Q08J23 767 aaKnown RBP eCLIP18.53■□□□□ 0.56
SHANK1-201ENST00000293441 KLC3Q6P597 504 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 TRIM67Q6ZTA4 783 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 IFT43Q96FT9 208 aa18.53■□□□□ 0.56
SHANK1-201ENST00000293441 KLHL8Q9P2G9 620 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-201ENST00000293441 CNOT8Q9UFF9 292 aaKnown RBP18.53■□□□□ 0.56
SHANK1-201ENST00000293441 DACT3Q96B18 629 aaPredicted RBP18.53■□□□□ 0.56
SHANK1-201ENST00000293441 MMTAG2Q9BU76 263 aaKnown RBP18.53■□□□□ 0.56
SHANK1-201ENST00000293441 Q9H521 79 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms