RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GOLGA8SH3BPF8 625 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 NFIBO00712 420 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 C2orf54Q08AI8 447 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 WDR48Q8TAF3 677 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 SCFD1Q8WVM8 642 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 ECT2Q9H8V3 914 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 GNPATO15228 680 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 CLK1P49759 484 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 CDC37Q16543 378 aaPredicted RBP14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 RBM41Q96IZ5 413 aaKnown RBP14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 VPS50Q96JG6 964 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 SLC39A2Q9NP94 309 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 NBPF26B4DH59 902 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 ANGPT2O15123 496 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 NBPF15Q8N660 670 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 SLITRK6Q9H5Y7 841 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 PCDHB8Q9UN66 801 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 ARL2BPQ9Y2Y0 163 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 ZMYM6O95789 1325 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 ABCC12Q96J65 1359 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 E2F4Q16254 413 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 DDI1Q8WTU0 396 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 ZSCAN10Q96SZ4 725 aaPredicted RBP14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 DSCC1Q9BVC3 393 aa14.84□□□□□ -0.03
CCDC88A-201ENST00000263630 PSMA2P25787 234 aa14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 TFAMQ00059 246 aaKnown RBP14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 AASDHQ4L235 1098 aaPredicted RBP14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 SPATA5Q8NB90 893 aa14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 ACAP3Q96P50 834 aa14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 OLFM1Q99784 485 aa14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 C6orf203Q9P0P8 240 aaPredicted RBP14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 UBE4BO95155 1302 aa14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 DPP9Q86TI2 863 aa14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 TGFBRAP1Q8WUH2 860 aa14.83□□□□□ -0.03
CCDC88A-201ENST00000263630 ZNF467Q7Z7K2 595 aaPredicted RBP14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 RHOT2Q8IXI1 618 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 SH3TC2Q8TF17 1288 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 ANKRD49Q8WVL7 239 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 GJA10Q969M2 543 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 MTERF3Q96E29 417 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 STXBP3O00186 592 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 LRRN2O75325 713 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 KRT17Q04695 432 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 CYLC2Q14093 348 aaPredicted RBP14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 SLC35F6Q8N357 371 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 OSBPL1AQ9BXW6 950 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 CARD9Q9H257 536 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 DYRK4Q9NR20 520 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 INPP5FQ9Y2H2 1132 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 INO80B-WBP1J3KQ70 363 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 EYA2O00167 538 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 KITP10721 976 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 ALAS1P13196 640 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 DPY19L2Q6NUT2 758 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 RASSF3Q86WH2 238 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 HSPH1Q92598 858 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 INO80BQ9C086 356 aaPredicted RBP14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 SUPT3HB4E1H0 165 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 M0R3G1 203 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 MAN2A1Q16706 1144 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 BBS9Q3SYG4 887 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 PRPF18Q99633 342 aaKnown RBP14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 PSD3Q9NYI0 1048 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 PCDHA5Q9Y5H7 936 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 CCDC188H7C350 402 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 STAMQ92783 540 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 ELAC2Q9BQ52 826 aaKnown RBP14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 AP3B1O00203 1094 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 ATXN3P54252 364 aaPredicted RBP14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 HPCAP84074 193 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 CCDC149Q6ZUS6 474 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 PIGUQ9H490 435 aa14.83□□□□□ -0.04
CCDC88A-201ENST00000263630 SNAPC4Q5SXM2 1469 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 NAALADL2Q58DX5 795 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 LRRC49Q8IUZ0 686 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 CLEC4FQ8N1N0 589 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 COQ7Q99807 217 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 RPF1Q9H9Y2 349 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 AURKCQ9UQB9 309 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 HIC1Q14526 733 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 CC2D2BQ6DHV5 1058 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 DCAF5Q96JK2 942 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 MYLK2Q9H1R3 596 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 SYNCRIPO60506 623 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 DDAH1O94760 285 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 CTDSPL2Q05D32 466 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 KLHL24Q6TFL4 600 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 HEXIM2Q96MH2 286 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 CMA1P23946 247 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 ERICH1Q86X53 443 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 DDIASQ8IXT1 998 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 ZNF654Q8IZM8 581 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 MED23Q9ULK4 1368 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 CC2D2AQ9P2K1 1620 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 CCND2P30279 289 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 IYDQ6PHW0 289 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 KBTBD3Q8NAB2 608 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 NFATC2IPQ8NCF5 419 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 RFWD2Q8NHY2 731 aa14.82□□□□□ -0.04
CCDC88A-201ENST00000263630 SLC24A3Q9HC58 644 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms