RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CHRDL2Q6WN34 429 aa22.73■■□□□ 1.23
PTCD3-220ENST00000627371 LRRC8DQ7L1W4 858 aa22.73■■□□□ 1.23
PTCD3-220ENST00000627371 SCLYQ96I15 445 aa22.73■■□□□ 1.23
PTCD3-220ENST00000627371 USP28Q96RU2 1077 aa22.73■■□□□ 1.23
PTCD3-220ENST00000627371 STK24Q9Y6E0 443 aa22.73■■□□□ 1.23
PTCD3-220ENST00000627371 SMIM35A0A1B0GVV1 85 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 VWA3AA6NCI4 1184 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 MAGEB2O15479 319 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 MED24O75448 989 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 BRD1O95696 1058 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 CSF2RAP15509 400 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 RPA1P27694 616 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 MTERF2Q49AM1 385 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 ZNF618Q5T7W0 954 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 TRAF7Q6Q0C0 670 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 RSPH3Q86UC2 560 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 CATSPER3Q86XQ3 398 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 CEP89Q96ST8 783 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 PRO3102Q9H379 93 aa22.72■■□□□ 1.23
PTCD3-220ENST00000627371 TCHHQ07283 1943 aa22.71■■□□□ 1.23
PTCD3-220ENST00000627371 PARNO95453 639 aaKnown RBP22.71■■□□□ 1.23
PTCD3-220ENST00000627371 RFC2P35250 354 aa22.71■■□□□ 1.23
PTCD3-220ENST00000627371 PLA2G4FQ68DD2 849 aa22.71■■□□□ 1.23
PTCD3-220ENST00000627371 OTUD6AQ7L8S5 288 aa22.71■■□□□ 1.23
PTCD3-220ENST00000627371 DNAJB3Q8WWF6 145 aa22.71■■□□□ 1.23
PTCD3-220ENST00000627371 ZNF396Q96N95 335 aaPredicted RBP22.71■■□□□ 1.23
PTCD3-220ENST00000627371 CYP26B1Q9NR63 512 aa22.71■■□□□ 1.23
PTCD3-220ENST00000627371 PPME1Q9Y570 386 aa22.71■■□□□ 1.23
PTCD3-220ENST00000627371 MORC2Q9Y6X9 1032 aaPredicted RBP22.71■■□□□ 1.23
PTCD3-220ENST00000627371 MUTP22033 750 aa22.7■■□□□ 1.22
PTCD3-220ENST00000627371 ANP32AP39687 249 aaKnown RBP22.7■■□□□ 1.22
PTCD3-220ENST00000627371 NASPP49321 788 aaPredicted RBP22.7■■□□□ 1.22
PTCD3-220ENST00000627371 CEBPZQ03701 1054 aaKnown RBP22.7■■□□□ 1.22
PTCD3-220ENST00000627371 TBC1D8BQ0IIM8 1120 aa22.7■■□□□ 1.22
PTCD3-220ENST00000627371 SNX29Q8TEQ0 813 aa22.7■■□□□ 1.22
PTCD3-220ENST00000627371 SH2D3AQ9BRG2 576 aa22.7■■□□□ 1.22
PTCD3-220ENST00000627371 UBE2OQ9C0C9 1292 aaKnown RBP22.7■■□□□ 1.22
PTCD3-220ENST00000627371 FAM49AQ9H0Q0 323 aaPredicted RBP22.7■■□□□ 1.22
PTCD3-220ENST00000627371 IL23AQ9NPF7 189 aa22.7■■□□□ 1.22
PTCD3-220ENST00000627371 ZDHHC9Q9Y397 364 aa22.7■■□□□ 1.22
PTCD3-220ENST00000627371 PP2D1A8MPX8 630 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 RSPH10B2B2RC85 870 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 CTSHP09668 335 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 RSPH10BP0C881 870 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 CCT6AP40227 531 aaKnown RBP22.69■■□□□ 1.22
PTCD3-220ENST00000627371 EPHB4P54760 987 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 NPEPPSP55786 919 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 FAM26DQ5JW98 314 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 KRT79Q5XKE5 535 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 LINC01465Q8N7H1 131 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 CEP170P1Q96L14 293 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 AK8Q96MA6 479 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 ANKEF1Q9NU02 776 aa22.69■■□□□ 1.22
PTCD3-220ENST00000627371 ZBTB39O15060 712 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 PFKMP08237 780 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 XRCC6P12956 609 aaKnown RBP eCLIP22.68■■□□□ 1.22
PTCD3-220ENST00000627371 MGAT3Q09327 533 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 SLC39A14Q15043 492 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 EFCAB12Q6NXP0 572 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 POTEGQ6S5H5 508 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 RPUSD2Q8IZ73 545 aaKnown RBP22.68■■□□□ 1.22
PTCD3-220ENST00000627371 KIAA0319LQ8IZA0 1049 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 NME8Q8N427 588 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 METTL13Q8N6R0 699 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 VWCEQ96DN2 955 aa22.68■■□□□ 1.22
PTCD3-220ENST00000627371 MMTAG2Q9BU76 263 aaKnown RBP22.68■■□□□ 1.22
PTCD3-220ENST00000627371 IGKV6-21A0A0C4DH24 114 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 MAFO75444 373 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-220ENST00000627371 TMOD1P28289 359 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 MARCKSP29966 332 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-220ENST00000627371 CDC25AP30304 524 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 DDIT3P35638 169 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 LONP1P36776 959 aaKnown RBP22.67■■□□□ 1.22
PTCD3-220ENST00000627371 MRPS6P82932 125 aaKnown RBP22.67■■□□□ 1.22
PTCD3-220ENST00000627371 MBTPS1Q14703 1052 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 GPNMBQ14956 572 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 ECM1Q16610 540 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 XKR9Q5GH70 373 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 IER5Q5VY09 327 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 ATL3Q6DD88 541 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 LRRC71Q8N4P6 559 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 ZNF579Q8NAF0 562 aaKnown RBP22.67■■□□□ 1.22
PTCD3-220ENST00000627371 PIGOQ8TEQ8 1089 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 NACC1Q96RE7 527 aa22.67■■□□□ 1.22
PTCD3-220ENST00000627371 JPH2Q9BR39 696 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-220ENST00000627371 FBXO2Q9UK22 296 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-220ENST00000627371 COLQQ9Y215 455 aaPredicted RBP22.67■■□□□ 1.22
PTCD3-220ENST00000627371 NBNO60934 754 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 YEATS4O95619 227 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 CHRNA1P02708 482 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 CXCL10P02778 98 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 ACRP10323 421 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 RFC5P40937 340 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 RARRES1P49788 294 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 CLCN3P51790 818 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 GRIN1Q05586 938 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 FOXD4L6Q3SYB3 417 aaPredicted RBP22.66■■□□□ 1.22
PTCD3-220ENST00000627371 PSRC1Q6PGN9 363 aaPredicted RBP22.66■■□□□ 1.22
PTCD3-220ENST00000627371 FOXD4L3Q6VB84 417 aaPredicted RBP22.66■■□□□ 1.22
PTCD3-220ENST00000627371 C16orf59Q7L2K0 433 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms