RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 BANK1Q8NDB2 785 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 ZNF397Q8NF99 534 aaPredicted RBP18.58■□□□□ 0.57
LDLR-206ENST00000557958 GPRC5AQ8NFJ5 357 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 CCDC43Q96MW1 224 aaKnown RBP18.58■□□□□ 0.57
LDLR-206ENST00000557958 KCTD10Q9H3F6 313 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 CAPN11Q9UMQ6 739 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 SLC45A1Q9Y2W3 748 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 MANSC4A6NHS7 340 aaPredicted RBP18.58■□□□□ 0.56
LDLR-206ENST00000557958 LYPLA2O95372 231 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 SLC25A27O95847 323 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 SLC10A3P09131 477 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 CCDC175P0C221 793 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 GUCY2CP25092 1073 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 CNTN2Q02246 1040 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 GNPTABQ3T906 1256 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 EPM2AIP1Q7L775 607 aaPredicted RBP18.58■□□□□ 0.56
LDLR-206ENST00000557958 ZNF784Q8NCA9 323 aaPredicted RBP18.58■□□□□ 0.56
LDLR-206ENST00000557958 MYRIPQ8NFW9 859 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 OR8K1Q8NGG5 319 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 PARK7Q99497 189 aaKnown RBP18.58■□□□□ 0.56
LDLR-206ENST00000557958 DBR1Q9UK59 544 aaKnown RBP18.58■□□□□ 0.56
LDLR-206ENST00000557958 TRAF3IP3Q9Y228 551 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 PFASO15067 1338 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 UBE4BO95155 1302 aa18.58■□□□□ 0.56
LDLR-206ENST00000557958 PDXKO00764 312 aa18.57■□□□□ 0.56
LDLR-206ENST00000557958 GCNT3O95395 438 aa18.57■□□□□ 0.56
LDLR-206ENST00000557958 RPL13P26373 211 aaKnown RBP18.57■□□□□ 0.56
LDLR-206ENST00000557958 SYCP1Q15431 976 aa18.57■□□□□ 0.56
LDLR-206ENST00000557958 MYCT1Q8N699 235 aa18.57■□□□□ 0.56
LDLR-206ENST00000557958 CCDC102AQ96A19 550 aa18.57■□□□□ 0.56
LDLR-206ENST00000557958 INPP4AQ96PE3 977 aaPredicted RBP18.57■□□□□ 0.56
LDLR-206ENST00000557958 EFCC1Q9HA90 598 aa18.57■□□□□ 0.56
LDLR-206ENST00000557958 ZNHIT6Q9NWK9 470 aaKnown RBP18.57■□□□□ 0.56
LDLR-206ENST00000557958 A0A1W2PQJ5 194 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 IGF2BP3O00425 579 aaKnown RBP eCLIP18.56■□□□□ 0.56
LDLR-206ENST00000557958 DKC1O60832 514 aaKnown RBP eCLIP18.56■□□□□ 0.56
LDLR-206ENST00000557958 PGK2P07205 417 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 MARSP56192 900 aaKnown RBP18.56■□□□□ 0.56
LDLR-206ENST00000557958 ADAM9Q13443 819 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 CYP4F22Q6NT55 531 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 ZNF746Q6NUN9 644 aaPredicted RBP18.56■□□□□ 0.56
LDLR-206ENST00000557958 ZC3H3Q8IXZ2 948 aaKnown RBP18.56■□□□□ 0.56
LDLR-206ENST00000557958 DNERQ8NFT8 737 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 GTF3C2Q8WUA4 911 aaPredicted RBP18.56■□□□□ 0.56
LDLR-206ENST00000557958 ZNF592Q92610 1267 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 IWS1Q96ST2 819 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 DNAJC7Q99615 494 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 TIPINQ9BVW5 301 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 FGFBP2Q9BYJ0 223 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 PORCNQ9H237 461 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 TYW1Q9NV66 732 aaKnown RBP18.56■□□□□ 0.56
LDLR-206ENST00000557958 FAM184BQ9ULE4 1060 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 TTC26A0AVF1 554 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 POTEB2H3BUK9 544 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 ZNF131P52739 623 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 PSMC5P62195 406 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 CCNA1P78396 465 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 PPP2R3AQ06190 1150 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 KCTD2Q14681 263 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 MMP19Q99542 508 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 CPA4Q9UI42 421 aa18.56■□□□□ 0.56
LDLR-206ENST00000557958 SOWAHDA6NJG2 315 aa18.55■□□□□ 0.56
LDLR-206ENST00000557958 RSPH10B2B2RC85 870 aa18.55■□□□□ 0.56
LDLR-206ENST00000557958 RSPH10BP0C881 870 aa18.55■□□□□ 0.56
LDLR-206ENST00000557958 NR2F2P24468 414 aa18.55■□□□□ 0.56
LDLR-206ENST00000557958 GCLCP48506 637 aaPredicted RBP18.55■□□□□ 0.56
LDLR-206ENST00000557958 ZBED6P86452 979 aa18.55■□□□□ 0.56
LDLR-206ENST00000557958 TAF1CQ15572 869 aaPredicted RBP18.55■□□□□ 0.56
LDLR-206ENST00000557958 C4orf19Q8IY42 314 aa18.55■□□□□ 0.56
LDLR-206ENST00000557958 SMAP1Q8IYB5 467 aaPredicted RBP18.55■□□□□ 0.56
LDLR-206ENST00000557958 SENP7Q9BQF6 1050 aa18.55■□□□□ 0.56
LDLR-206ENST00000557958 WRAP73Q9P2S5 460 aaPredicted RBP18.55■□□□□ 0.56
LDLR-206ENST00000557958 FAM155AB1AL88 458 aaPredicted RBP18.54■□□□□ 0.56
LDLR-206ENST00000557958 MYBP10242 640 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 COPB2P35606 906 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 CASP5P51878 434 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 ALCAMQ13740 583 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 PADI6Q6TGC4 694 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 TOGARAM2Q6ZUX3 1019 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 FAM178BQ8IXR5 827 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 ZIC5Q96T25 663 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 PCDHB13Q9Y5F0 798 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.54■□□□□ 0.56
LDLR-206ENST00000557958 NFASCO94856 1347 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 ETF1P62495 437 aaKnown RBP18.54■□□□□ 0.56
LDLR-206ENST00000557958 ODR4Q5SWX8 454 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 IFNL1Q8IU54 200 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 REXO1L1PQ8IX06 675 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 MROH8Q9H579 483 aa18.54■□□□□ 0.56
LDLR-206ENST00000557958 LARSQ9P2J5 1176 aaKnown RBP18.54■□□□□ 0.56
LDLR-206ENST00000557958 SLC16A3O15427 465 aaKnown RBP18.53■□□□□ 0.56
LDLR-206ENST00000557958 PRPF6O94906 941 aaKnown RBP18.53■□□□□ 0.56
LDLR-206ENST00000557958 YWHABP31946 246 aaKnown RBP18.53■□□□□ 0.56
LDLR-206ENST00000557958 FSTL1Q12841 308 aa18.53■□□□□ 0.56
LDLR-206ENST00000557958 FRMD5Q7Z6J6 570 aa18.53■□□□□ 0.56
LDLR-206ENST00000557958 GOLGA5Q8TBA6 731 aa18.53■□□□□ 0.56
LDLR-206ENST00000557958 TTYH3Q9C0H2 523 aa18.53■□□□□ 0.56
LDLR-206ENST00000557958 METTL14Q9HCE5 456 aaKnown RBP18.53■□□□□ 0.56
LDLR-206ENST00000557958 PCDHA10Q9Y5I2 948 aa18.53■□□□□ 0.56
LDLR-206ENST00000557958 PHLPP2Q6ZVD8 1323 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 141.2 ms