RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 HSPA4P34932 840 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 SETQ01105 290 aaPredicted RBP16.04■□□□□ 0.16
SNHG1-213ENST00000540725 HYAL1Q12794 435 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 NFX1Q12986 1120 aaKnown RBP16.04■□□□□ 0.16
SNHG1-213ENST00000540725 PAN2Q504Q3 1202 aaKnown RBP16.04■□□□□ 0.16
SNHG1-213ENST00000540725 ZNF484Q5JVG2 852 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 SWSAP1Q6NVH7 229 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 KIAA0319LQ8IZA0 1049 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 P2RX5Q93086 422 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 ZNF577Q9BSK1 485 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 ALG13Q9NP73 1137 aaKnown RBP16.04■□□□□ 0.16
SNHG1-213ENST00000540725 C11orf16Q9NQ32 467 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 TBC1D22BQ9NU19 505 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 FAM50BQ9Y247 325 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 FAM86C2PA6NEL3 165 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 ZBTB42B2RXF5 422 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 PRPF3O43395 683 aaKnown RBP16.03■□□□□ 0.16
SNHG1-213ENST00000540725 ATP4AP20648 1035 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 LTBRP36941 435 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 GATMP50440 423 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 CTC1Q2NKJ3 1217 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 ZNF746Q6NUN9 644 aaPredicted RBP16.03■□□□□ 0.16
SNHG1-213ENST00000540725 CKAP2LQ8IYA6 745 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 PHKBQ93100 1093 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 CDHR5Q9HBB8 845 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 ERVK-5Q9HDB9 667 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 LRFN2Q9ULH4 789 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 PLAGL2Q9UPG8 496 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 NOC2LQ9Y3T9 749 aaKnown RBP16.03■□□□□ 0.16
SNHG1-213ENST00000540725 PIEZO1Q92508 2521 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 TRIOO75962 3097 aa16.03■□□□□ 0.16
SNHG1-213ENST00000540725 MGEA5O60502 916 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 RPS6KA5O75582 802 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 C22orf31O95567 290 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 ITGB1P05556 798 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 IBSPP21815 317 aaPredicted RBP16.02■□□□□ 0.16
SNHG1-213ENST00000540725 RPS6KB1P23443 525 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 GNA11P29992 359 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 PLA2G5P39877 138 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 SARSP49591 514 aaKnown RBP16.02■□□□□ 0.16
SNHG1-213ENST00000540725 AKAP17AQ02040 695 aaKnown RBP16.02■□□□□ 0.16
SNHG1-213ENST00000540725 CAMK1Q14012 370 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 NAALADL2Q58DX5 795 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 SMAP1Q8IYB5 467 aaPredicted RBP16.02■□□□□ 0.16
SNHG1-213ENST00000540725 FBXL16Q8N461 479 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 RASGRP4Q8TDF6 673 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 TMEM40Q8WWA1 233 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 BBXQ8WY36 941 aaPredicted RBP16.02■□□□□ 0.16
SNHG1-213ENST00000540725 AGXT2Q9BYV1 514 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 TCEAL9Q9UHQ7 104 aa16.02■□□□□ 0.16
SNHG1-213ENST00000540725 MAFBQ9Y5Q3 323 aaPredicted RBP16.02■□□□□ 0.16
SNHG1-213ENST00000540725 PPFIA3O75145 1194 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 PSAPP07602 524 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 DNAJB1P25685 340 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 GTF2F1P35269 517 aaKnown RBP eCLIP16.01■□□□□ 0.15
SNHG1-213ENST00000540725 DLX2Q07687 328 aaPredicted RBP16.01■□□□□ 0.15
SNHG1-213ENST00000540725 NTRK3Q16288 839 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 PRR16Q569H4 304 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 ODR4Q5SWX8 454 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 FAM43BQ6ZT52 329 aaPredicted RBP16.01■□□□□ 0.15
SNHG1-213ENST00000540725 KLHL23Q8NBE8 558 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 CCDC148Q8NFR7 591 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 SPPL3Q8TCT6 385 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 BICD2Q8TD16 824 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 FAM122AQ96E09 287 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 PPP1R16BQ96T49 567 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 RNF26Q9BY78 433 aaPredicted RBP16.01■□□□□ 0.15
SNHG1-213ENST00000540725 IGFLR1Q9H665 355 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 PRKAG3Q9UGI9 489 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 ST3GAL5Q9UNP4 418 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 HCN4Q9Y3Q4 1203 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 PCDHA10Q9Y5I2 948 aa16.01■□□□□ 0.15
SNHG1-213ENST00000540725 DENND3A2RUS2 1198 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 CIITAP33076 1130 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 ZP2Q05996 745 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 CLUL1Q15846 466 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 KIZQ2M2Z5 673 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 TRMT1LQ7Z2T5 733 aaKnown RBP16■□□□□ 0.15
SNHG1-213ENST00000540725 PPP2R3CQ969Q6 453 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 OSMRQ99650 979 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 ADAM2Q99965 735 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 SLC26A6Q9BXS9 759 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 C1orf112Q9NSG2 853 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 GABBR1Q9UBS5 961 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 PCDHB7Q9Y5E2 793 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 GPR182O15218 404 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 LINC01565O15544 149 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 TBX10O75333 385 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 VTNP04004 478 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 ALADP13716 330 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 IFNAR1P17181 557 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 PSMA5P28066 241 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 CRYBB1P53674 252 aaPredicted RBP16■□□□□ 0.15
SNHG1-213ENST00000540725 SLC24A5Q71RS6 500 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 FAM228AQ86W67 206 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 ADHFE1Q8IWW8 467 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 METTL13Q8N6R0 699 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 POF1BQ8WVV4 589 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 LENG9Q96B70 501 aa16■□□□□ 0.15
SNHG1-213ENST00000540725 NCOA5Q9HCD5 579 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms