RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 USP38Q8NB14 1042 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 RASSF8Q8NHQ8 419 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 TCP11Q8WWU5 503 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 HERVK_113Q902F9 699 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 APBB2Q92870 758 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 DYDC2Q96IM9 177 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 CDK5RAP3Q96JB5 506 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 CEP170P1Q96L14 293 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 ZNF396Q96N95 335 aaPredicted RBP6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 MTMR9Q96QG7 549 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 CTAGE1Q96RT6 745 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 NIFKQ9BYG3 293 aaKnown RBP6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 TMEM60Q9H2L4 133 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 PRO3102Q9H379 93 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 SUGCTQ9HAC7 445 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 TUFT1Q9NNX1 390 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 CYP26B1Q9NR63 512 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 LRWD1Q9UFC0 647 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 GINS2Q9Y248 185 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 PCDHB6Q9Y5E3 794 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 TRPV2Q9Y5S1 764 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 CDY2AQ9Y6F7 541 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 SLC4A7Q9Y6M7 1214 aa6.04□□□□□ -1.44
HMGB1P40-201ENST00000525121 BRCA2P51587 3418 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 MYH7BA7E2Y1 1941 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 KDM3AQ9Y4C1 1321 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 ABHD14A-ACY1A0A1B0GW23 586 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 ARHGEF35A5YM69 484 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 WNT7AO00755 349 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 CXCL10P02778 98 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 AMHP03971 560 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 GHRP10912 638 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 ATP2A2P16615 1042 aaKnown RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 ATP4AP20648 1035 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 MUTP22033 750 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 TXLNAP40222 546 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 CCT6AP40227 531 aaKnown RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 TOB1P50616 345 aaPredicted RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 CLCN3P51790 818 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 EPHB4P54760 987 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 SMAD3P84022 425 aaKnown RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 ATP2C1P98194 919 aaPredicted RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 SPIRE1Q08AE8 756 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 TMEM62Q0P6H9 643 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 RESTQ13127 1097 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 PAK2Q13177 524 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 HIC1Q14526 733 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 PDIA5Q14554 519 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 RAB30Q15771 203 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 LRIT3Q3SXY7 679 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 FAM26DQ5JW98 314 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 TMEM240Q5SV17 173 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 C9orf50Q5SZB4 431 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 PLA2G4FQ68DD2 849 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 EFCAB12Q6NXP0 572 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 TSHZ1Q6ZSZ6 1077 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 FAM43BQ6ZT52 329 aaPredicted RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 SPRYD3Q8NCJ5 442 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 SNX29Q8TEQ0 813 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 NLRP7Q8WX94 980 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 PSPC1Q8WXF1 523 aaKnown RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 WNT8BQ93098 351 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 AK8Q96MA6 479 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 NACC1Q96RE7 527 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 SLC9A7Q96T83 725 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 ZBED2Q9BTP6 218 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 POLR3CQ9BUI4 534 aaPredicted RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 IFIH1Q9BYX4 1025 aaKnown RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 CELF4Q9BZC1 486 aaKnown RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 ANKEF1Q9NU02 776 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 RNF216Q9NWF9 866 aaPredicted RBP6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 RGL1Q9NZL6 768 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 MSRAQ9UJ68 235 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 MTMR6Q9Y217 621 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 SQORQ9Y6N5 450 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 LTBP2Q14767 1821 aa6.03□□□□□ -1.44
HMGB1P40-201ENST00000525121 PDE4DIPQ5VU43 2346 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 VWA3AA6NCI4 1184 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 ZBTB42B2RXF5 422 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 GPR182O15218 404 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 SLC26A4O43511 780 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 NBNO60934 754 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 MAFO75444 373 aaPredicted RBP6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 RPS6KA5O75582 802 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 DGAT1O75907 488 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 SLITRK3O94933 977 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 LYPLA2O95372 231 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 CHRNA1P02708 482 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 VTNP04004 478 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 ZSCAN22P10073 491 aaPredicted RBP6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 XRCC6P12956 609 aaKnown RBP eCLIP6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 RPA1P27694 616 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 ANP32AP39687 249 aaKnown RBP6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 UBA7P41226 1012 aa6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 CRYBB1P53674 252 aaPredicted RBP6.02□□□□□ -1.45
HMGB1P40-201ENST00000525121 TFDP1Q14186 410 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms