RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 SYNJ2BP-COX16A0A087WUM0 186 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 BHMG1C9JSJ3 638 aaPredicted RBP8.24□□□□□ -1.09
HDAC3-216ENST00000523088 M0R2C6 588 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 SRGAP3O43295 1099 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 DAB1O75553 588 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 RNF8O76064 485 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 C7P10643 843 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 GRK2P25098 689 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 PRKAR1BP31321 381 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 ETV3P41162 512 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 CENPAP49450 140 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 BCAMP50895 628 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 OXCT1P55809 520 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 RAC1P63000 192 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 MDM2Q00987 491 aaPredicted RBP8.24□□□□□ -1.09
HDAC3-216ENST00000523088 ROR1Q01973 937 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 RUNX1T1Q06455 604 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 RBL2Q08999 1139 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 SCRN1Q12765 414 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 SHROOM1Q2M3G4 852 aaPredicted RBP8.24□□□□□ -1.09
HDAC3-216ENST00000523088 CCDC153Q494R4 210 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 VPS53Q5VIR6 699 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 PPP4R3AQ6IN85 833 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 C8orf74Q6P047 294 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 ATG9AQ7Z3C6 839 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 POTEDQ86YR6 584 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 CCDC50Q8IVM0 306 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 WDR75Q8IWA0 830 aaKnown RBP8.24□□□□□ -1.09
HDAC3-216ENST00000523088 CCDC116Q8IYX3 515 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 OR8H2Q8N162 312 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 AADATQ8N5Z0 425 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 HVCN1Q96D96 273 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 CLIP3Q96DZ5 547 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 WNK4Q96J92 1243 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 ZIC5Q96T25 663 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 GORASP1Q9BQQ3 440 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 SPZ1Q9BXG8 430 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 CSRNP2Q9H175 543 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 OSBPL2Q9H1P3 480 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 TTC12Q9H892 705 aaPredicted RBP8.24□□□□□ -1.09
HDAC3-216ENST00000523088 ZCCHC17Q9NP64 241 aaKnown RBP8.24□□□□□ -1.09
HDAC3-216ENST00000523088 JAG2Q9Y219 1238 aa8.24□□□□□ -1.09
HDAC3-216ENST00000523088 MRPL42Q9Y6G3 142 aaKnown RBP8.24□□□□□ -1.09
HDAC3-216ENST00000523088 MAST2Q6P0Q8 1798 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 ARPC4-TTLL3A0A0A6YYG9 625 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 CCDC85CA6NKD9 419 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 WDR46O15213 610 aaKnown RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 RASA4O43374 803 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 KCNJ13O60928 360 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 OLFM2O95897 454 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 LDHBP07195 334 aaKnown RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 CCDC166P0CW27 439 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 TRIM27P14373 513 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 S100A1P23297 94 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 PSMA4P25789 261 aaKnown RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 HSD17B2P37059 387 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 B2MP61769 119 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 RELQ04864 619 aaPredicted RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 POLA2Q14181 598 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 SEMA3AQ14563 771 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 SPCS2Q15005 226 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 CCDC183Q5T5S1 534 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 NBPF12Q5TAG4 269 aaPredicted RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 PRAMEF18Q5VWM3 479 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 FAM117BQ6P1L5 589 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 LLGL2Q6P1M3 1020 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 MOB2Q70IA6 237 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 RTL10Q7L3V2 364 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 RALYLQ86SE5 291 aaKnown RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 SPARTQ8N0X7 666 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 CCDC148Q8NFR7 591 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 OR8H1Q8NGG4 311 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 GDAP1Q8TB36 358 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 KLHDC4Q8TBB5 520 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 CCHCR1Q8TD31 782 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 E2F7Q96AV8 911 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 THAP11Q96EK4 314 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 GIMAP5Q96F15 307 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 MEIS3Q99687 375 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 TTPALQ9BTX7 342 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 PLVAPQ9BX97 442 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 OXCT2Q9BYC2 517 aaPredicted RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 SIL1Q9H173 461 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 TDRD3Q9H7E2 651 aaKnown RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 HESX1Q9UBX0 185 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 ZC3H7BQ9UGR2 993 aaKnown RBP8.23□□□□□ -1.09
HDAC3-216ENST00000523088 ATPIF1Q9UII2 106 aa8.23□□□□□ -1.09
HDAC3-216ENST00000523088 TCP10L2B9ZVM9 353 aa8.22□□□□□ -1.09
HDAC3-216ENST00000523088 E9PMD0 336 aa8.22□□□□□ -1.09
HDAC3-216ENST00000523088 GPR25O00155 361 aa8.22□□□□□ -1.09
HDAC3-216ENST00000523088 NDC80O14777 642 aa8.22□□□□□ -1.09
HDAC3-216ENST00000523088 NVLO15381 856 aaKnown RBP8.22□□□□□ -1.09
HDAC3-216ENST00000523088 FKTNO75072 461 aa8.22□□□□□ -1.09
HDAC3-216ENST00000523088 USP2O75604 605 aaPredicted RBP8.22□□□□□ -1.09
HDAC3-216ENST00000523088 APBB3O95704 486 aa8.22□□□□□ -1.09
HDAC3-216ENST00000523088 KRT10P13645 584 aa8.22□□□□□ -1.09
HDAC3-216ENST00000523088 POLR2EP19388 210 aaKnown RBP8.22□□□□□ -1.09
HDAC3-216ENST00000523088 DDIT3P35638 169 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms