RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 OSTM1Q86WC4 334 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 PTRH1Q86Y79 214 aaKnown RBP5.7□□□□□ -1.5
VPS29-202ENST00000447578 LRRC47Q8N1G4 583 aaKnown RBP5.7□□□□□ -1.5
VPS29-202ENST00000447578 ST13P5Q8NFI4 369 aaPredicted RBP5.7□□□□□ -1.5
VPS29-202ENST00000447578 THAP3Q8WTV1 239 aaPredicted RBP5.7□□□□□ -1.5
VPS29-202ENST00000447578 EDAQ92838 391 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 OR14A2Q96R54 314 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 METTL14Q9HCE5 456 aaKnown RBP5.7□□□□□ -1.5
VPS29-202ENST00000447578 TMEM260Q9NX78 707 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 PFDN2Q9UHV9 154 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 SRPK3Q9UPE1 567 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 PCDHA8Q9Y5H6 950 aa5.7□□□□□ -1.5
VPS29-202ENST00000447578 MAN2B1O00754 1011 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 KCNK3O14649 394 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 CUTAO60888 179 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 RAD17O75943 681 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 PYGMP11217 842 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 PDE6AP16499 860 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 KRT15P19012 456 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 KCNQ1P51787 676 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 IL13RA1P78552 427 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 PAK1Q13153 545 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 SQSTM1Q13501 440 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 C2orf27AQ580R0 203 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 DPP8Q6V1X1 898 aaPredicted RBP5.69□□□□□ -1.5
VPS29-202ENST00000447578 LARP4Q71RC2 724 aaKnown RBP eCLIP5.69□□□□□ -1.59e-6■■□□□ 12.1
VPS29-202ENST00000447578 SPATC1Q76KD6 591 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 KIAA0907Q7Z7F0 614 aaPredicted RBP5.69□□□□□ -1.5
VPS29-202ENST00000447578 PCDH19Q8TAB3 1148 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 KIAA1683Q9H0B3 1180 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 CSRNP2Q9H175 543 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 C12orf65Q9H3J6 166 aaKnown RBP5.69□□□□□ -1.5
VPS29-202ENST00000447578 CATSPERZQ9NTU4 200 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 CDC42EP3Q9UKI2 254 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 CBLCQ9ULV8 474 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 NR2E1Q9Y466 385 aa5.69□□□□□ -1.5
VPS29-202ENST00000447578 SRGAP2CP0DJJ0 459 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 MC4RP32245 332 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 JAM2P57087 298 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 SSRP1Q08945 709 aaKnown RBP5.68□□□□□ -1.5
VPS29-202ENST00000447578 DUSP8Q13202 625 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 GPR19Q15760 415 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 ZMAT1Q5H9K5 638 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 FOXB2Q5VYV0 432 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 MTDHQ86UE4 582 aaKnown RBP5.68□□□□□ -1.5
VPS29-202ENST00000447578 NLGN4XQ8N0W4 816 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 FEZ1Q99689 392 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 SPATA9Q9BWV2 254 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 PLA2G12BQ9BX93 195 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 ZDHHC5Q9C0B5 715 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 ATP23Q9Y6H3 246 aa5.68□□□□□ -1.5
VPS29-202ENST00000447578 NARSO43776 548 aaKnown RBP5.67□□□□□ -1.5
VPS29-202ENST00000447578 DIAPH1O60610 1272 aaKnown RBP5.67□□□□□ -1.5
VPS29-202ENST00000447578 ZNF202O95125 648 aa5.67□□□□□ -1.5
VPS29-202ENST00000447578 PTGS1P23219 599 aa5.67□□□□□ -1.5
VPS29-202ENST00000447578 ETV4P43268 484 aa5.67□□□□□ -1.5
VPS29-202ENST00000447578 TCEA2Q15560 299 aa5.67□□□□□ -1.5
VPS29-202ENST00000447578 FAM209AQ5JX71 171 aa5.67□□□□□ -1.5
VPS29-202ENST00000447578 NOL8Q76FK4 1167 aaKnown RBP5.67□□□□□ -1.5
VPS29-202ENST00000447578 FBXW5Q969U6 566 aa5.67□□□□□ -1.5
VPS29-202ENST00000447578 INCENPQ9NQS7 918 aa5.67□□□□□ -1.5
VPS29-202ENST00000447578 SLC30A1Q9Y6M5 507 aa5.67□□□□□ -1.5
VPS29-202ENST00000447578 ARHGAP6O43182 974 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 ADCY3O60266 1144 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 C4BPAP04003 597 aaKnown RBP5.66□□□□□ -1.5
VPS29-202ENST00000447578 HMGCRP04035 888 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 C1SP09871 688 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 MASP1P48740 699 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 PTH1RQ03431 593 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 TKFCQ3LXA3 575 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 LSM12Q3MHD2 195 aaKnown RBP5.66□□□□□ -1.5
VPS29-202ENST00000447578 MAMDC4Q6UXC1 1216 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 POLNQ7Z5Q5 900 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 C1orf210Q8IVY1 113 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 ZNF808Q8N4W9 903 aaPredicted RBP5.66□□□□□ -1.5
VPS29-202ENST00000447578 JMYQ8N9B5 988 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 IL17DQ8TAD2 202 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 CFHR4Q92496 578 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 SCYL1Q96KG9 808 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 GALNT8Q9NY28 637 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 BTBD7Q9P203 1132 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 PCDHA9Q9Y5H5 950 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 PTCH2Q9Y6C5 1203 aa5.66□□□□□ -1.5
VPS29-202ENST00000447578 PRAMEF25A6NGN4 478 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 AQP7O14520 342 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 WNT9AO14904 365 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 ASMTLO95671 621 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 C6orf222P0C671 652 aaPredicted RBP5.65□□□□□ -1.5
VPS29-202ENST00000447578 TGFB2P61812 414 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 AMPD3Q01432 767 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 GUCY1A3Q02108 690 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 ABHD18Q0P651 414 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 FOXL1Q12952 345 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 SEC23AQ15436 765 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 LRSAM1Q6UWE0 723 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 EP400NLQ6ZTU2 488 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 C16orf59Q7L2K0 433 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 SCUBE1Q8IWY4 988 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 SYNPOQ8N3V7 929 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 PTPRN2Q92932 1015 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms