RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 TAP1Q03518 808 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 CCDC92Q53HC0 331 aaPredicted RBP10.26□□□□□ -0.77
SNX1-202ENST00000380285 C1orf146Q5VVC0 180 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 LRRC47Q8N1G4 583 aaKnown RBP10.26□□□□□ -0.77
SNX1-202ENST00000380285 ZBTB18Q99592 522 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 BRIP1Q9BX63 1249 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 SMYD2Q9NRG4 433 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 PPARGC1AQ9UBK2 798 aaKnown RBP10.26□□□□□ -0.77
SNX1-202ENST00000380285 ARHGEF9O43307 516 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 ZRANB2O95218 330 aaKnown RBP eCLIP10.26□□□□□ -0.77
SNX1-202ENST00000380285 HSPA9P38646 679 aaKnown RBP10.26□□□□□ -0.77
SNX1-202ENST00000380285 NOP14P78316 857 aaKnown RBP10.26□□□□□ -0.77
SNX1-202ENST00000380285 SPOPLQ6IQ16 392 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 CABLES1Q8TDN4 633 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 SCG3Q8WXD2 468 aaKnown RBP10.26□□□□□ -0.77
SNX1-202ENST00000380285 MTBPQ96DY7 904 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 AP1M1Q9BXS5 423 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 SMG5Q9UPR3 1016 aaKnown RBP10.26□□□□□ -0.77
SNX1-202ENST00000380285 PCDHB6Q9Y5E3 794 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 SETD1BQ9UPS6 1966 aaKnown RBP10.26□□□□□ -0.77
SNX1-202ENST00000380285 EFCAB6Q5THR3 1501 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 MAP3K4Q9Y6R4 1608 aa10.26□□□□□ -0.77
SNX1-202ENST00000380285 AGTP01019 485 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 SAT1P21673 171 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 DDIT3P35638 169 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 DHX40Q8IX18 779 aaKnown RBP10.25□□□□□ -0.77
SNX1-202ENST00000380285 TGS1Q96RS0 853 aaKnown RBP10.25□□□□□ -0.77
SNX1-202ENST00000380285 SNX5Q9Y5X3 404 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 PSMD7P51665 324 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 AGGF1Q8N302 714 aaeCLIP10.25□□□□□ -0.77
SNX1-202ENST00000380285 SNF8Q96H20 258 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 ECT2Q9H8V3 914 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 SPHKAPQ2M3C7 1700 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 TMEM2Q9UHN6 1383 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 MBD5Q9P267 1494 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 ASAP2O43150 1006 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 KCNB1Q14721 858 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 STAT4Q14765 748 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 TBC1D9BQ66K14 1250 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 NIM1KQ8IY84 436 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 DDX56Q9NY93 547 aaKnown RBP10.25□□□□□ -0.77
SNX1-202ENST00000380285 ADAMTS1Q9UHI8 967 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 PHKA1P46020 1223 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 NR5A1Q13285 461 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 AGBL2Q5U5Z8 902 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 ATP6V1E2Q96A05 226 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 ALKBH8Q96BT7 664 aaKnown RBP10.25□□□□□ -0.77
SNX1-202ENST00000380285 ERVV-1B6SEH8 477 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 CYP27A1Q02318 531 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 SMCR8Q8TEV9 937 aaPredicted RBP10.25□□□□□ -0.77
SNX1-202ENST00000380285 ADD3Q9UEY8 706 aaKnown RBP10.25□□□□□ -0.77
SNX1-202ENST00000380285 CAPN11Q9UMQ6 739 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 ARL2BPQ9Y2Y0 163 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 KRT4P19013 534 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 LARGE2Q8N3Y3 721 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 SAYSD1Q9NPB0 183 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 A2ML1A8K2U0 1454 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 CDC42BPGQ6DT37 1551 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 NFKBIAP25963 317 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 TCP10Q12799 353 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 ZYXQ15942 572 aaKnown RBP10.25□□□□□ -0.77
SNX1-202ENST00000380285 EP400NLQ6ZTU2 488 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 ZSWIM5Q9P217 1185 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 GINS2Q9Y248 185 aa10.25□□□□□ -0.77
SNX1-202ENST00000380285 EIF3HO15372 352 aaKnown RBP eCLIP10.24□□□□□ -0.77
SNX1-202ENST00000380285 ZFXP17010 805 aaPredicted RBP10.24□□□□□ -0.77
SNX1-202ENST00000380285 CYP4A11Q02928 519 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 GRAMD1CQ8IYS0 662 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 ATP11CQ8NB49 1132 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 SNX25Q9H3E2 840 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 ZFYVE16Q7Z3T8 1539 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 A0A0G2JND7 137 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 PPP1R37O75864 691 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 ALAS1P13196 640 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 TBXAS1P24557 533 aaPredicted RBP10.24□□□□□ -0.77
SNX1-202ENST00000380285 CCND2P30279 289 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 PAPOLAP51003 745 aaKnown RBP10.24□□□□□ -0.77
SNX1-202ENST00000380285 ARMCX2Q7L311 632 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 TMCO5AQ8N6Q1 288 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 TEX12Q9BXU0 123 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 ING2Q9H160 280 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 GOLGA8MH3BSY2 632 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 KRT7P08729 469 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 CCND1P24385 295 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 GYG1P46976 350 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 NEK2P51955 445 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 OCRLQ01968 901 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 MORF4L2Q15014 288 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 LRRC43Q8N309 656 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 CALN1Q9BXU9 219 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 SEPT9Q9UHD8 586 aaPredicted RBP10.24□□□□□ -0.77
SNX1-202ENST00000380285 SATB2Q9UPW6 733 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 CDC42BPAQ5VT25 1732 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 GFAPP14136 432 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 MAP3K10Q02779 954 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 BBS9Q3SYG4 887 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 ELOA2Q8IYF1 753 aaPredicted RBP10.24□□□□□ -0.77
SNX1-202ENST00000380285 CEP70Q8NHQ1 597 aa10.24□□□□□ -0.77
SNX1-202ENST00000380285 HNRNPLLQ8WVV9 542 aaKnown RBP10.24□□□□□ -0.77
SNX1-202ENST00000380285 KRT82Q9NSB4 513 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms