RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 AFAP1L2Q8N4X5 818 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 LRRC37BQ96QE4 947 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 BHMT2Q9H2M3 363 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 SGK1O00141 431 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 POLR2BP30876 1174 aaKnown RBP20.8■□□□□ 0.92
USP48-201ENST00000308271 PDIA6Q15084 440 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 TMC4Q7Z404 712 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 RNF168Q8IYW5 571 aaPredicted RBP20.8■□□□□ 0.92
USP48-201ENST00000308271 MT-ND3P03897 115 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 SERPINB6P35237 376 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 XKR9Q5GH70 373 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 SRRM1Q8IYB3 904 aaKnown RBP20.8■□□□□ 0.92
USP48-201ENST00000308271 RAD51CO43502 376 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 KNOP1Q1ED39 458 aaKnown RBP20.79■□□□□ 0.92
USP48-201ENST00000308271 MYCBPAPQ8TBZ2 947 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 PIGBQ92521 554 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 DNAJC17Q9NVM6 304 aaKnown RBP20.79■□□□□ 0.92
USP48-201ENST00000308271 MYOM1P52179 1685 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 PHF20L1A8MW92 1017 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 CEP120Q8N960 986 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 SMC1BQ8NDV3 1235 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 TMEM60Q9H2L4 133 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 H0Y3Z8 333 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 STAM2O75886 525 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 ZNF211Q13398 564 aaPredicted RBP20.79■□□□□ 0.92
USP48-201ENST00000308271 PCDHA6Q9UN73 950 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 TFR2Q9UP52 801 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 PCDHA8Q9Y5H6 950 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 DEPDC5O75140 1603 aa20.79■□□□□ 0.92
USP48-201ENST00000308271 SLC16A2P36021 539 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 ZYXQ15942 572 aaKnown RBP20.78■□□□□ 0.92
USP48-201ENST00000308271 ILDR1Q86SU0 546 aaPredicted RBP20.78■□□□□ 0.92
USP48-201ENST00000308271 TGS1Q96RS0 853 aaKnown RBP20.78■□□□□ 0.92
USP48-201ENST00000308271 GGPS1O95749 300 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 LIG4P49917 911 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 EPM2AIP1Q7L775 607 aaPredicted RBP20.78■□□□□ 0.92
USP48-201ENST00000308271 SFR1Q86XK3 245 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 SERPINB13Q9UIV8 391 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 THRAP3Q9Y2W1 955 aaKnown RBP20.78■□□□□ 0.92
USP48-201ENST00000308271 OVOS2A0A0G2JMS6 1433 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 DMP1Q13316 513 aaPredicted RBP20.78■□□□□ 0.92
USP48-201ENST00000308271 NAB2Q15742 525 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 LRRC23Q53EV4 343 aaPredicted RBP20.78■□□□□ 0.92
USP48-201ENST00000308271 KCTD1Q719H9 257 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 CDAN1Q8IWY9 1227 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 MSL3Q8N5Y2 521 aaKnown RBP20.78■□□□□ 0.92
USP48-201ENST00000308271 USP38Q8NB14 1042 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 MORC4Q8TE76 937 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 ARL2BPQ9Y2Y0 163 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 XDHP47989 1333 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 E9PMD0 336 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 IRX1P78414 480 aaPredicted RBP20.78■□□□□ 0.92
USP48-201ENST00000308271 COG7P83436 770 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 PSMD6Q15008 389 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 POMGNT1Q8WZA1 660 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 ANO3Q9BYT9 981 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 THEGQ9P2T0 379 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 CD163L1Q9NR16 1453 aa20.78■□□□□ 0.92
USP48-201ENST00000308271 NPHP4O75161 1426 aaPredicted RBP20.77■□□□□ 0.92
USP48-201ENST00000308271 HSPA9P38646 679 aaKnown RBP20.77■□□□□ 0.92
USP48-201ENST00000308271 TOB1P50616 345 aaPredicted RBP20.77■□□□□ 0.92
USP48-201ENST00000308271 FIGNQ5HY92 759 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 RNF207Q6ZRF8 634 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 CENPUQ71F23 418 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 NLRX1Q86UT6 975 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 ARL8AQ96BM9 186 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 FAM167BQ9BTA0 163 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 MAP2P11137 1827 aaKnown RBP20.77■□□□□ 0.92
USP48-201ENST00000308271 CHN1P15882 459 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 CDK17Q00537 523 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 RASA3Q14644 834 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 NT5DC1Q5TFE4 455 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 CPXCR1Q8N123 301 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 HAUS1Q96CS2 278 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 FGFR1OP2Q9NVK5 253 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 PFASO15067 1338 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 SALL1Q9NSC2 1324 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 CCT8L1PA6NM43 557 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 TTI1O43156 1089 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 TMOD1P28289 359 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 AARSP49588 968 aaKnown RBP eCLIP20.77■□□□□ 0.92
USP48-201ENST00000308271 PDIA5Q14554 519 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 SYT2Q8N9I0 419 aaPredicted RBP20.77■□□□□ 0.92
USP48-201ENST00000308271 DDX23Q9BUQ8 820 aaKnown RBP20.77■□□□□ 0.92
USP48-201ENST00000308271 TRIM55Q9BYV6 548 aa20.77■□□□□ 0.92
USP48-201ENST00000308271 EPB41L4AQ9HCS5 686 aaPredicted RBP20.77■□□□□ 0.92
USP48-201ENST00000308271 DMGDHQ9UI17 866 aaKnown RBP20.77■□□□□ 0.92
USP48-201ENST00000308271 PFDN1O60925 122 aa20.77■□□□□ 0.91
USP48-201ENST00000308271 KIAA1755Q5JYT7 1200 aa20.77■□□□□ 0.91
USP48-201ENST00000308271 CCDC137Q6PK04 289 aaKnown RBP20.77■□□□□ 0.91
USP48-201ENST00000308271 FRMD5Q7Z6J6 570 aa20.77■□□□□ 0.91
USP48-201ENST00000308271 FOXP4Q8IVH2 680 aaPredicted RBP20.77■□□□□ 0.91
USP48-201ENST00000308271 OR2W6PQ8NHA6 318 aa20.77■□□□□ 0.91
USP48-201ENST00000308271 PCIF1Q9H4Z3 704 aa20.77■□□□□ 0.91
USP48-201ENST00000308271 TRPC6Q9Y210 931 aa20.77■□□□□ 0.91
USP48-201ENST00000308271 RNF8O76064 485 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 KCNV2Q8TDN2 545 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 IPO5O00410 1097 aaKnown RBP20.76■□□□□ 0.91
USP48-201ENST00000308271 GYG2O15488 501 aa20.76■□□□□ 0.91
USP48-201ENST00000308271 SARSP49591 514 aaKnown RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms