RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 TRIM9Q9C026 710 aa14.27□□□□□ -0.12
NUP54-201ENST00000264883 NSRP1Q9H0G5 558 aaKnown RBP14.27□□□□□ -0.12
NUP54-201ENST00000264883 LRRC4CQ9HCJ2 640 aa14.27□□□□□ -0.12
NUP54-201ENST00000264883 ANKIB1Q9P2G1 1089 aa14.27□□□□□ -0.12
NUP54-201ENST00000264883 TNRC6CQ9HCJ0 1690 aaKnown RBP14.27□□□□□ -0.13
NUP54-201ENST00000264883 SSU72P8A0A1W2PR75 194 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 SPDYE5A6NIY4 337 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 F8VZ95 297 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 RNF8O76064 485 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 NPTXRO95502 500 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 APBA3O96018 575 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 GYS1P13807 737 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 ANKRD40Q6AI12 368 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 MAEAQ7L5Y9 396 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 TMC3Q7Z5M5 1100 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 CABP7Q86V35 215 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 STAG2Q8N3U4 1231 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 TAF4BQ92750 862 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 LZTS2Q9BRK4 669 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 MYH1P12882 1939 aa14.27□□□□□ -0.13
NUP54-201ENST00000264883 KIAA1551Q9HCM1 1747 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 ABLIM1O14639 778 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 CNGA1P29973 690 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 RANBP1P43487 201 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 MRPS35P82673 323 aaKnown RBP14.26□□□□□ -0.13
NUP54-201ENST00000264883 DHX9Q08211 1270 aaKnown RBP14.26□□□□□ -0.13
NUP54-201ENST00000264883 GRM4Q14833 912 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 MAN2A1Q16706 1144 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 ASTE1Q2TB18 679 aaPredicted RBP14.26□□□□□ -0.13
NUP54-201ENST00000264883 VWA3BQ502W6 1294 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 PPP1R15BQ5SWA1 713 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 ANO7Q6IWH7 933 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 ARHGAP22Q7Z5H3 698 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 TRIM74Q86UV6 250 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 TRIM73Q86UV7 250 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 LMNTD2Q8IXW0 634 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 KIF2BQ8N4N8 673 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 IFT74Q96LB3 600 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 GORASP1Q9BQQ3 440 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 RAB17Q9H0T7 212 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 MMRN2Q9H8L6 949 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 PCDHA6Q9UN73 950 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 PCDHA8Q9Y5H6 950 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 FAM205AQ6ZU69 1335 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 COL1A1P02452 1464 aaPredicted RBP14.26□□□□□ -0.13
NUP54-201ENST00000264883 TSPY2A6NKD2 308 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 ALDH3A1P30838 453 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 EIF3BP55884 814 aaKnown RBP14.26□□□□□ -0.13
NUP54-201ENST00000264883 COPS2P61201 443 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 DYNLL1P63167 89 aaKnown RBP14.26□□□□□ -0.13
NUP54-201ENST00000264883 NAB2Q15742 525 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 KIAA0753Q2KHM9 967 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 KRT25Q7Z3Z0 450 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 SPATA21Q7Z572 469 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 HOOK3Q86VS8 718 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 PROCA1Q8NCQ7 364 aaPredicted RBP14.26□□□□□ -0.13
NUP54-201ENST00000264883 PIDD1Q9HB75 910 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 GGT7Q9UJ14 662 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 SIK3Q9Y2K2 1263 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 C2CD2Q9Y426 696 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 FLT1P17948 1338 aa14.26□□□□□ -0.13
NUP54-201ENST00000264883 CYP2D7A0A087X1C5 515 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 GPR75-ASB3A0A0A6YYF3 556 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 PVALEFA0A1B0GWK0 134 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 BHMG1C9JSJ3 638 aaPredicted RBP14.25□□□□□ -0.13
NUP54-201ENST00000264883 OR52Z1P0C646 297 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 ASIC1P78348 528 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 GALNTL6Q49A17 601 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 CENPPQ6IPU0 288 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 CNBD1Q8NA66 436 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 NLRP3Q96P20 1036 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 DCP1AQ9NPI6 582 aaPredicted RBP14.25□□□□□ -0.13
NUP54-201ENST00000264883 ARHGEF3Q9NR81 526 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 CHCHD3Q9NX63 227 aaKnown RBP14.25□□□□□ -0.13
NUP54-201ENST00000264883 LMCD1Q9NZU5 365 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 ASB3Q9Y575 518 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 NKRFO15226 690 aaKnown RBP eCLIP14.25□□□□□ -0.13
NUP54-201ENST00000264883 DAPK3O43293 454 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 FLOT1O75955 427 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 PLCG1P19174 1290 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 PCK1P35558 622 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 MMP13P45452 471 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 TUBP50607 506 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 LRRC63Q05C16 580 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 LBRQ14739 615 aaKnown RBP14.25□□□□□ -0.13
NUP54-201ENST00000264883 TDRD12Q587J7 1177 aaKnown RBP14.25□□□□□ -0.13
NUP54-201ENST00000264883 NUGGCQ68CJ6 796 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 SCFD2Q8WU76 684 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 SYN2Q92777 582 aaPredicted RBP14.25□□□□□ -0.13
NUP54-201ENST00000264883 PRMT1Q99873 361 aaKnown RBP14.25□□□□□ -0.13
NUP54-201ENST00000264883 TRIM4Q9C037 500 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 LRRC27Q9C0I9 530 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 INTS9Q9NV88 658 aaKnown RBP14.25□□□□□ -0.13
NUP54-201ENST00000264883 WDR35Q9P2L0 1181 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 STK17AQ9UEE5 414 aa14.25□□□□□ -0.13
NUP54-201ENST00000264883 RBAK-RBAKDNI3L0D1 243 aa14.24□□□□□ -0.13
NUP54-201ENST00000264883 KCNK3O14649 394 aa14.24□□□□□ -0.13
NUP54-201ENST00000264883 MAP3K13O43283 966 aa14.24□□□□□ -0.13
NUP54-201ENST00000264883 HIP1RO75146 1068 aa14.24□□□□□ -0.13
NUP54-201ENST00000264883 TM4SF1P30408 202 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms