RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 SMC6Q96SB8 1091 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 PAIP2Q9BPZ3 127 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 MTG1Q9BT17 334 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 NUP58Q9BVL2 599 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 IFIH1Q9BYX4 1025 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 VCPKMTQ9H867 229 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 MYO1AQ9UBC5 1043 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 TJP2Q9UDY2 1190 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 PCDHA6Q9UN73 950 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 PCDHA8Q9Y5H6 950 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 PCDHA10Q9Y5I2 948 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 TACC3Q9Y6A5 838 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 TECPR2O15040 1411 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 POTEB3A0JP26 581 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 C2CD2LO14523 706 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 HBP1O60381 514 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 EFCAB14O75071 495 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 F13A1P00488 732 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 TERF1P54274 439 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 SNAP25P60880 206 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 CYP27A1Q02318 531 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 TYRO3Q06418 890 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 PAK1Q13153 545 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 TRIM28Q13263 835 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 ERCC6LQ2NKX8 1250 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 CYP4F22Q6NT55 531 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 POTEBQ6S5H4 581 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 OOSP2Q86WS3 158 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 VPS52Q8N1B4 723 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 CCNYQ8ND76 341 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 ATP2A3Q93084 1043 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 ZKSCAN4Q969J2 545 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 ATP6V1E2Q96A05 226 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 TNIP3Q96KP6 325 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 RAB3IPQ96QF0 476 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 TRIM56Q9BRZ2 755 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 RNF26Q9BY78 433 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 MRPL4Q9BYD3 311 aaKnown RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 TSKSQ9UJT2 592 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 PCDHA4Q9UN74 947 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 PRG3Q9Y2Y8 225 aaPredicted RBP3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 DAGLAQ9Y4D2 1042 aa3.18□□□□□ -1.9
SMCHD1-203ENST00000577880 CASZ1Q86V15 1759 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 COL24A1Q17RW2 1714 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 IPO5O00410 1097 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CLGNO14967 610 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 POLR2DO15514 142 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 THAP12O43422 761 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CAMTA2O94983 1202 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 NR3C2P08235 984 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SRGNP10124 158 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 AVPR1AP37288 418 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 GRIK1P39086 918 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 QARSP47897 775 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TRAPPC10P48553 1259 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PSMC5P62195 406 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PPATQ06203 517 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 KLHL30Q0D2K2 578 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PPIGQ13427 754 aaKnown RBP eCLIP3.17□□□□□ -1.97e-7■■■□□ 19
SMCHD1-203ENST00000577880 RPS6KA2Q15349 733 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PKN2Q16513 984 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MGAT5BQ3V5L5 792 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ACBD5Q5T8D3 534 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 GPR153Q6NV75 609 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 RWDD4Q6NW29 188 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ZNF771Q7L3S4 317 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CTU1Q7Z7A3 348 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CCDC25Q86WR0 208 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 DDX42Q86XP3 938 aaKnown RBP eCLIP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MYLK4Q86YV6 388 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SUGP1Q8IWZ8 645 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 FAM43AQ8N2R8 423 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 KIF18AQ8NI77 898 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TBCKQ8TEA7 893 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SCFD1Q8WVM8 642 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CHAMP1Q96JM3 812 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PGBD1Q96JS3 809 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SEPT5Q99719 369 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 YIPF2Q9BWQ6 316 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MRPL9Q9BYD2 267 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TRPV6Q9H1D0 765 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 KCNH6Q9H252 994 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SUDS3Q9H7L9 328 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PARVGQ9HBI0 331 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 NCOA5Q9HCD5 579 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 JPH1Q9HDC5 661 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 STAP1Q9ULZ2 295 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MAPK8IP1Q9UQF2 711 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MRPS17Q9Y2R5 130 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ADGRL2O95490 1459 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TTLL13PA6NNM8 815 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ADM5C9JUS6 153 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ZBTB7BO15156 539 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 EGFRP00533 1210 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 P4HBP07237 508 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CYP2C19P33261 490 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TPD52P55327 224 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 COG7P83436 770 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ADAM9Q13443 819 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms