RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 PSMD2Q13200 908 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 NUGGCQ68CJ6 796 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 ZNF746Q6NUN9 644 aaPredicted RBP14.09□□□□□ -0.15
MSH6-210ENST00000540021 METTL13Q8N6R0 699 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 GLG1Q92896 1179 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 CAVIN3Q969G5 261 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 CHMP6Q96FZ7 201 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 SLC4A9Q96Q91 983 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 BHMT2Q9H2M3 363 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 IL17RBQ9NRM6 502 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 GRID2IPA4D2P6 1211 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 ELF1P32519 619 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 CYB5D1Q6P9G0 228 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 C3orf67Q6ZVT6 689 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 TXNRD3Q86VQ6 643 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 SUGP1Q8IWZ8 645 aaKnown RBP14.08□□□□□ -0.16
MSH6-210ENST00000540021 MRC1P22897 1456 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 PRLRP16471 622 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 FGFR4P22455 802 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 STXBP4Q6ZWJ1 553 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 RAPGEF5Q92565 580 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 BZW2Q9Y6E2 419 aaKnown RBP14.08□□□□□ -0.16
MSH6-210ENST00000540021 ARHGAP23Q9P227 1491 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 FIGNQ5HY92 759 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 KCNV2Q8TDN2 545 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 PIGOQ8TEQ8 1089 aa14.08□□□□□ -0.16
MSH6-210ENST00000540021 KDM3BQ7LBC6 1761 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 CCDC188H7C350 402 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 CHN1P15882 459 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 PLCB3Q01970 1234 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 TTBK2Q6IQ55 1244 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 KCNK18Q7Z418 384 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 FAM186BQ8IYM0 893 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 IFT74Q96LB3 600 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 HOMER3Q9NSC5 361 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 SIK3Q9Y2K2 1263 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 MST1RQ04912 1400 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 TOPAZ1Q8N9V7 1692 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 MYH10P35580 1976 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 RASGRF2O14827 1237 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 UCHL3P15374 230 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 SCP2P22307 547 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 RCSD1Q6JBY9 416 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 PROM2Q8N271 834 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 ISCUQ9H1K1 167 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 PCIF1Q9H4Z3 704 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 DDX20Q9UHI6 824 aaKnown RBP14.07□□□□□ -0.16
MSH6-210ENST00000540021 CFBP00751 764 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 KRT5P13647 590 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 FBF1Q8TES7 1133 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 PRMT1Q99873 361 aaKnown RBP14.07□□□□□ -0.16
MSH6-210ENST00000540021 PPP1R12CQ9BZL4 782 aa14.07□□□□□ -0.16
MSH6-210ENST00000540021 SESN3P58005 492 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 CDK17Q00537 523 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 SETDB1Q15047 1291 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 NKX1-1Q15270 411 aaPredicted RBP14.06□□□□□ -0.16
MSH6-210ENST00000540021 CCDC77Q9BR77 488 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 VCPKMTQ9H867 229 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 TMBIM4Q9HC24 238 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 DBR1Q9UK59 544 aaKnown RBP14.06□□□□□ -0.16
MSH6-210ENST00000540021 FAM196BA6NMK8 535 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 NTSR2O95665 410 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 TRIM49P0CI25 452 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 TRIM49CP0CI26 452 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 PPP4R3AQ6IN85 833 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 KIF2BQ8N4N8 673 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 FAM167BQ9BTA0 163 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 PLVAPQ9BX97 442 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 YY1AP1Q9H869 796 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 USTQ9Y2C2 406 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 USP17L10C9JJH3 530 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 SKAP2O75563 359 aaPredicted RBP14.06□□□□□ -0.16
MSH6-210ENST00000540021 FERP16591 822 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 FECHP22830 423 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 PMS2P54278 862 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 GALCP54803 685 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 SKOR1P84550 965 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 FAM182BQ5T319 152 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 NSMFQ6X4W1 530 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 FAM47EQ6ZV65 393 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 C4orf32Q8N8J7 132 aa14.06□□□□□ -0.16
MSH6-210ENST00000540021 LBHD1Q9BQE6 289 aaPredicted RBP14.06□□□□□ -0.16
MSH6-210ENST00000540021 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.06□□□□□ -0.16
MSH6-210ENST00000540021 ZYXQ15942 572 aaKnown RBP14.05□□□□□ -0.16
MSH6-210ENST00000540021 NBPF9Q3BBW0 867 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 PPM1KQ8N3J5 372 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 TAB3Q8N5C8 712 aaPredicted RBP14.05□□□□□ -0.16
MSH6-210ENST00000540021 CNOT10Q9H9A5 744 aaKnown RBP14.05□□□□□ -0.16
MSH6-210ENST00000540021 MED1Q15648 1581 aaPredicted RBP14.05□□□□□ -0.16
MSH6-210ENST00000540021 OPLAHO14841 1288 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 SHOX2O60902 331 aaPredicted RBP14.05□□□□□ -0.16
MSH6-210ENST00000540021 TRIM37O94972 964 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 CAMTA2O94983 1202 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 RASA1P20936 1047 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 MEI1Q5TIA1 1274 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 TBC1D9BQ66K14 1250 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 FAM178BQ8IXR5 827 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 SH3GL2Q99962 352 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 DNAJC12Q9UKB3 198 aa14.05□□□□□ -0.16
MSH6-210ENST00000540021 THAP12O43422 761 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms