RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 GGA2Q9UJY4 613 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 PHF8Q9UPP1 1060 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 ASB3Q9Y575 518 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 AFF2P51816 1311 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 STK36Q9NRP7 1315 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 TMEM120BA0PK00 339 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 GNAZP19086 355 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 ATP6V1C1P21283 382 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 GBP1P32455 592 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 BNIP1Q12981 228 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 DNAJC3Q13217 504 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 RIPK1Q13546 671 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 WTAPQ15007 396 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 INF2Q27J81 1249 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 CNPY1Q3B7I2 92 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 SNX30Q5VWJ9 437 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 UTS2BQ765I0 119 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 TMEM110Q86TL2 294 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 ZBTB46Q86UZ6 589 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 FANCBQ8NB91 859 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 PBKQ96KB5 322 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 INPP4AQ96PE3 977 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 FAM118BQ9BPY3 351 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 TBC1D10AQ9BXI6 508 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 BRD8Q9H0E9 1235 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 TMEM60Q9H2L4 133 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 RNPEPL1Q9HAU8 725 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 PRDM16Q9HAZ2 1276 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 ERVK-5Q9HDB9 667 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 PIH1D3Q9NQM4 214 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 CEP126Q9P2H0 1117 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 DCTN4Q9UJW0 460 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 PLAGL2Q9UPG8 496 aa7.87□□□□□ -1.15
LIMCH1-207ENST00000508466 ZNF532Q9HCE3 1301 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 CFAP73A6NFT4 308 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 NVLO15381 856 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 USP1O94782 785 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 PRKCIP41743 596 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 NLRP5P59047 1200 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 OVGP1Q12889 678 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 BIRC3Q13489 604 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 TTI2Q6NXR4 508 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 RIBC1Q8N443 379 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 CCHCR1Q8TD31 782 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 STK32AQ8WU08 396 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 SDR42E1Q8WUS8 393 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 FMO2Q99518 471 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 ZMYND12Q9H0C1 365 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 CARD9Q9H257 536 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 ARHGEF3Q9NR81 526 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 PDS5AQ29RF7 1337 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 IGSF1Q8N6C5 1336 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 MYH15Q9Y2K3 1946 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 ARHGEF28Q8N1W1 1705 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 MST1RQ04912 1400 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 MYOCOSA0A1B0GUC4 107 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 GTPBP6O43824 516 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 OPHN1O60890 802 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 SUN1O94901 812 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 PGM3O95394 542 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 UBA7P41226 1012 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 DENND2CQ68D51 928 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 KBTBD2Q8IY47 623 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 ARHGAP18Q8N392 663 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 HIPK4Q8NE63 616 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 DDX27Q96GQ7 796 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 TUBGCP5Q96RT8 1024 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 SEMA6BQ9H3T3 888 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 ZHX3Q9H4I2 956 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 THAP9Q9H5L6 903 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 OSGEPQ9NPF4 335 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 SEPT11Q9NVA2 429 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 MYH1P12882 1939 aa7.86□□□□□ -1.15
LIMCH1-207ENST00000508466 PLEKHG1Q9ULL1 1385 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 SETBP1Q9Y6X0 1596 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 MROH1Q8NDA8 1641 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 CAPN9O14815 690 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 AFPP02771 609 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 PYGMP11217 842 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 PPP1R2P41236 205 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 MCAMP43121 646 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 PMS2P54278 862 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 RTP1P59025 263 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 MTA1Q13330 715 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 CNGA2Q16280 664 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 IFI16Q16666 785 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 C1orf141Q5JVX7 400 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 PPP1R2P3Q6NXS1 205 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 DUS1LQ6P1R4 473 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 GJB7Q6PEY0 223 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 PAOXQ6QHF9 649 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 EXOC3L1Q86VI1 746 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 SRRM1Q8IYB3 904 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 ATL2Q8NHH9 583 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 CEP70Q8NHQ1 597 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 LRRC8CQ8TDW0 803 aa7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 ZNF496Q96IT1 587 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 TGS1Q96RS0 853 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-207ENST00000508466 TTC1Q99614 292 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms