RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	GDF6	Q6KF10	455 aa	Predicted RBP	12.01	□□□□□ -0.49
UBR4-208	ENST00000459947	CCDC60	Q8IWA6	550 aa	Predicted RBP	12.01	□□□□□ -0.49
UBR4-208	ENST00000459947	USP38	Q8NB14	1042 aa		12.01	□□□□□ -0.49
UBR4-208	ENST00000459947	MAP7D2	Q96T17	732 aa		12.01	□□□□□ -0.49
UBR4-208	ENST00000459947	PCYT2	Q99447	389 aa		12.01	□□□□□ -0.49
UBR4-208	ENST00000459947	NIFK	Q9BYG3	293 aa	Known RBP	12.01	□□□□□ -0.49
UBR4-208	ENST00000459947	TTC12	Q9H892	705 aa	Predicted RBP	12.01	□□□□□ -0.49
UBR4-208	ENST00000459947	IL23A	Q9NPF7	189 aa		12.01	□□□□□ -0.49
UBR4-208	ENST00000459947	KDM3A	Q9Y4C1	1321 aa		12.01	□□□□□ -0.49
UBR4-208	ENST00000459947	CHMP4BP1	P59074	171 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	EARS2	Q5JPH6	523 aa	Known RBP	12	□□□□□ -0.49
UBR4-208	ENST00000459947	HAS1	Q92839	578 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	TRPV6	Q9H1D0	765 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	TANC1	Q9C0D5	1861 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	KIF28P	B7ZC32	967 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	CHMP2A	O43633	222 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	ATP2B1	P20020	1258 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	DNM2	P50570	870 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	ZNF174	Q15697	407 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	FAM26D	Q5JW98	314 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	IER5	Q5VY09	327 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	DTHD1	Q6ZMT9	781 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	GDF15	Q99988	308 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	FAM205C	A6NFA0	338 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	INSRR	P14616	1297 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	PRKCE	Q02156	737 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	LMBR1	Q8WVP7	490 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	APBB2	Q92870	758 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	UBE2O	Q9C0C9	1292 aa	Known RBP	12	□□□□□ -0.49
UBR4-208	ENST00000459947	RNPEP	Q9H4A4	650 aa		12	□□□□□ -0.49
UBR4-208	ENST00000459947	CYP2C9	P11712	490 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	TXK	P42681	527 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	ADAM17	P78536	824 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	ATP2C1	P98194	919 aa	Predicted RBP	11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	LRRC8D	Q7L1W4	858 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	LOXHD1	Q8IVV2	1947 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	BAIAP3	O94812	1187 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	MAGEA10	P43363	369 aa	Predicted RBP	11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	TRIM50	Q86XT4	487 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	TCP11	Q8WWU5	503 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	TRMT13	Q9NUP7	481 aa	Known RBP	11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	TRIM43B	A6NCK2	446 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	PTGS1	P23219	599 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	TRIM43	Q96BQ3	446 aa	Predicted RBP	11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	SETD4	Q9NVD3	440 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	MTMR6	Q9Y217	621 aa		11.99	□□□□□ -0.49
UBR4-208	ENST00000459947	MARK3	P27448	753 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	REST	Q13127	1097 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	KRT79	Q5XKE5	535 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	KCNG1	Q9UIX4	513 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	ANP32A	P39687	249 aa	Known RBP	11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	TBC1D8B	Q0IIM8	1120 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	NACC1	Q96RE7	527 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	NT5C3A	Q9H0P0	336 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	BCAS3	Q9H6U6	928 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	LRWD1	Q9UFC0	647 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	TRPV2	Q9Y5S1	764 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	PTGDR	Q13258	359 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	TRIM71	Q2Q1W2	868 aa	Known RBP	11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	MTHFD1L	Q6UB35	978 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	BAD	Q92934	168 aa		11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	EIF2AK1	Q9BQI3	630 aa	Known RBP	11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.98	□□□□□ -0.49
UBR4-208	ENST00000459947	PHLPP2	Q6ZVD8	1323 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	DDX11L8	A8MPP1	907 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	RSPH10B2	B2RC85	870 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	RSPH10B	P0C881	870 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	ZSCAN22	P10073	491 aa	Predicted RBP	11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	LONP1	P36776	959 aa	Known RBP	11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	TXLNA	P40222	546 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	SPIRE1	Q08AE8	756 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	SEPT8	Q92599	483 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	LXN	Q9BS40	222 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	PPP1R12C	Q9BZL4	782 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	DBR1	Q9UK59	544 aa	Known RBP	11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	ASAP2	O43150	1006 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	IQCF3	P0C7M6	154 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	RPA1	P27694	616 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	NUCB2	P80303	420 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	MRPS6	P82932	125 aa	Known RBP	11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	CNKSR3	Q6P9H4	555 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	TIPIN	Q9BVW5	301 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	INO80B	Q9C086	356 aa	Predicted RBP	11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	CFAP45	Q9UL16	551 aa		11.97	□□□□□ -0.49
UBR4-208	ENST00000459947	CXCL10	P02778	98 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	CKB	P12277	381 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	SYN1	P17600	705 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	THPO	P40225	353 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	TOB1	P50616	345 aa	Predicted RBP	11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	C4orf32	Q8N8J7	132 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	SLC7A3	Q8WY07	619 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	TMEM60	Q9H2L4	133 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	PCDHB6	Q9Y5E3	794 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	YEATS4	O95619	227 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	FGB	P02675	491 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	SH3RF1	Q7Z6J0	888 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	TDH	Q8IZJ6	230 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	DYDC2	Q96IM9	177 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	CDK5RAP3	Q96JB5	506 aa		11.96	□□□□□ -0.49
UBR4-208	ENST00000459947	ABHD14A-ACY1	A0A1B0GW23	586 aa		11.96	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms