RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 C1orf186Q6ZWK4 172 aa29.81■■■□□ 2.36
MSX1-201ENST00000382723 CCDC43Q96MW1 224 aaKnown RBP29.81■■■□□ 2.36
MSX1-201ENST00000382723 DBR1Q9UK59 544 aaKnown RBP29.81■■■□□ 2.36
MSX1-201ENST00000382723 MCM3APO60318 1980 aa29.81■■■□□ 2.36
MSX1-201ENST00000382723 ZNF862O60290 1169 aa29.81■■■□□ 2.36
MSX1-201ENST00000382723 ATG7O95352 703 aa29.81■■■□□ 2.36
MSX1-201ENST00000382723 DHX37Q8IY37 1157 aaKnown RBP29.81■■■□□ 2.36
MSX1-201ENST00000382723 ADSSL1Q8N142 457 aa29.81■■■□□ 2.36
MSX1-201ENST00000382723 KIAA0895Q8NCT3 520 aa29.81■■■□□ 2.36
MSX1-201ENST00000382723 TBC1D7Q9P0N9 293 aa29.81■■■□□ 2.36
MSX1-201ENST00000382723 GSTTP1A0A1W2PQM5 241 aa29.8■■■□□ 2.36
MSX1-201ENST00000382723 CTGFP29279 349 aa29.8■■■□□ 2.36
MSX1-201ENST00000382723 HTRA3P83110 453 aa29.8■■■□□ 2.36
MSX1-201ENST00000382723 HERC4Q5GLZ8 1057 aaPredicted RBP29.8■■■□□ 2.36
MSX1-201ENST00000382723 PLA2G4FQ68DD2 849 aa29.8■■■□□ 2.36
MSX1-201ENST00000382723 KATNBL1Q9H079 304 aa29.8■■■□□ 2.36
MSX1-201ENST00000382723 SYNRGQ9UMZ2 1314 aa29.8■■■□□ 2.36
MSX1-201ENST00000382723 RSPH10B2B2RC85 870 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 RSPH10BP0C881 870 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 CYP2B6P20813 491 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 PTGS1P23219 599 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 RARRES1P49788 294 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 TPM4P67936 248 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 EHHADHQ08426 723 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 STIM1Q13586 685 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 PADI6Q6TGC4 694 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 REM2Q8IYK8 340 aaPredicted RBP29.79■■■□□ 2.36
MSX1-201ENST00000382723 ENOX1Q8TC92 643 aaKnown RBP29.79■■■□□ 2.36
MSX1-201ENST00000382723 NELFBQ8WX92 580 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 GTPBP4Q9BZE4 634 aaKnown RBP29.79■■■□□ 2.36
MSX1-201ENST00000382723 ZNF302Q9NR11 478 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 ZNF236Q9UL36 1845 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 DKC1O60832 514 aaKnown RBP eCLIP29.79■■■□□ 2.36
MSX1-201ENST00000382723 TBC1D8O95759 1140 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 PAK1Q13153 545 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 PSMD2Q13200 908 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 USP6NLQ92738 828 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 SPATA33Q96N06 139 aa29.79■■■□□ 2.36
MSX1-201ENST00000382723 NOP56O00567 594 aaKnown RBP29.78■■■□□ 2.36
MSX1-201ENST00000382723 TBCAO75347 108 aaKnown RBP29.78■■■□□ 2.36
MSX1-201ENST00000382723 ADCYAP1R1P41586 468 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 PRKCEQ02156 737 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 HSDL1Q3SXM5 330 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 XKR9Q5GH70 373 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 FAM26FQ5R3K3 315 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 ANO5Q75V66 913 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 SEPT1Q8WYJ6 367 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 FANCLQ9NW38 375 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 FLRT1Q9NZU1 646 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 GJD2Q9UKL4 321 aa29.78■■■□□ 2.36
MSX1-201ENST00000382723 ZHX1Q9UKY1 873 aaPredicted RBP29.78■■■□□ 2.36
MSX1-201ENST00000382723 FRMD3A2A2Y4 597 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 TCF7P36402 384 aaPredicted RBP29.77■■■□□ 2.36
MSX1-201ENST00000382723 RGS2P41220 211 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 NPEPPSP55786 919 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 GJC2Q5T442 439 aaPredicted RBP29.77■■■□□ 2.36
MSX1-201ENST00000382723 GLIS3Q8NEA6 775 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 SOCS4Q8WXH5 440 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 ARHGAP39Q9C0H5 1083 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 ANKEF1Q9NU02 776 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 NFE2L3Q9Y4A8 694 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 IGSF9BQ9UPX0 1349 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 SFI1A8K8P3 1242 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 HOXC6P09630 235 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 ACVR2BQ13705 512 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 LRRC41Q15345 812 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 CCL14Q16627 93 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 ABHD16BQ9H3Z7 469 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 KCND2Q9NZV8 630 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 RWDD2AQ9UIY3 292 aa29.77■■■□□ 2.36
MSX1-201ENST00000382723 USO1O60763 962 aaKnown RBP29.76■■■□□ 2.35
MSX1-201ENST00000382723 ADCY5O95622 1261 aa29.76■■■□□ 2.35
MSX1-201ENST00000382723 PSMC4P43686 418 aa29.76■■■□□ 2.35
MSX1-201ENST00000382723 VEGFBP49765 207 aa29.76■■■□□ 2.35
MSX1-201ENST00000382723 MAEAQ7L5Y9 396 aa29.76■■■□□ 2.35
MSX1-201ENST00000382723 OTUD6AQ7L8S5 288 aa29.76■■■□□ 2.35
MSX1-201ENST00000382723 SFR1Q86XK3 245 aa29.76■■■□□ 2.35
MSX1-201ENST00000382723 MSL3Q8N5Y2 521 aaKnown RBP29.76■■■□□ 2.35
MSX1-201ENST00000382723 GPR20Q99678 358 aa29.76■■■□□ 2.35
MSX1-201ENST00000382723 HSD3B7Q9H2F3 369 aa29.76■■■□□ 2.35
MSX1-201ENST00000382723 MAFBQ9Y5Q3 323 aaPredicted RBP29.76■■■□□ 2.35
MSX1-201ENST00000382723 IGKV6D-21A0A0A0MT36 114 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 C11orf97A0A1B0GVM6 126 aaPredicted RBP29.75■■■□□ 2.35
MSX1-201ENST00000382723 RBM47A0AV96 593 aaKnown RBP29.75■■■□□ 2.35
MSX1-201ENST00000382723 PSMA7O14818 248 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 FAM13AO94988 1023 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 STBD1O95210 358 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 FCGRTP55899 365 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 HSP90AA4PQ58FG1 418 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 PCYT2Q99447 389 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 FGFBP2Q9BYJ0 223 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 SEPT9Q9UHD8 586 aaPredicted RBP29.75■■■□□ 2.35
MSX1-201ENST00000382723 LACTBP83111 547 aaPredicted RBP29.75■■■□□ 2.35
MSX1-201ENST00000382723 PRAMEF19Q5SWL8 479 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 TRIM47Q96LD4 638 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 PCDHA2Q9Y5H9 948 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 COL4A3BPQ9Y5P4 624 aa29.75■■■□□ 2.35
MSX1-201ENST00000382723 GUCY2CP25092 1073 aa29.74■■■□□ 2.35
MSX1-201ENST00000382723 SPATA1Q5VX52 437 aa29.74■■■□□ 2.35
MSX1-201ENST00000382723 CEP170P1Q96L14 293 aa29.74■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms