RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 USP28Q96RU2 1077 aa9.29□□□□□ -0.92
TDP1-201ENST00000335725 CARD14Q9BXL6 1004 aa9.29□□□□□ -0.92
TDP1-201ENST00000335725 THEGQ9P2T0 379 aa9.29□□□□□ -0.92
TDP1-201ENST00000335725 ZBTB1Q9Y2K1 713 aa9.29□□□□□ -0.92
TDP1-201ENST00000335725 TDRKHQ9Y2W6 561 aaKnown RBP9.29□□□□□ -0.92
TDP1-201ENST00000335725 USP15Q9Y4E8 981 aaPredicted RBP9.29□□□□□ -0.92
TDP1-201ENST00000335725 PBRM1Q86U86 1689 aa9.29□□□□□ -0.92
TDP1-201ENST00000335725 ZMYM6O95789 1325 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 ARHGEF40Q8TER5 1519 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 SH3PXD2BA1X283 911 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 TMEM114B3SHH9 223 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 AP3B1O00203 1094 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 YEATS4O95619 227 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 CYP1A2P05177 515 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 CCNB1P14635 433 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 IDEP14735 1019 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 ADD1P35611 737 aaKnown RBP9.28□□□□□ -0.92
TDP1-201ENST00000335725 TTC23LQ6PF05 361 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 PIP4K2CQ8TBX8 421 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 SCG3Q8WXD2 468 aaKnown RBP9.28□□□□□ -0.92
TDP1-201ENST00000335725 COX4I2Q96KJ9 171 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 ZNF317Q96PQ6 595 aaPredicted RBP9.28□□□□□ -0.92
TDP1-201ENST00000335725 RXFP1Q9HBX9 757 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 PCDHA7Q9UN72 937 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 ZNF652Q9Y2D9 606 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 DNMBPQ6XZF7 1577 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 A0A0U1RQJ8 604 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 ANKRD62A6NC57 917 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 CYP1A1P04798 512 aaPredicted RBP9.28□□□□□ -0.92
TDP1-201ENST00000335725 STK38Q15208 465 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 CRY1Q16526 586 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 MAP3K21Q5TCX8 1036 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 SIGIRRQ6IA17 410 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 TNIP2Q8NFZ5 429 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 DPF3Q92784 378 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 VTA1Q9NP79 307 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 GDF3Q9NR23 364 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 IL20Q9NYY1 176 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 ATPIF1Q9UII2 106 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 HERC5Q9UII4 1024 aaKnown RBP9.28□□□□□ -0.92
TDP1-201ENST00000335725 MAFFQ9ULX9 164 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 TBC1D30Q9Y2I9 924 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 SALL3Q9BXA9 1300 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 TMEM94Q12767 1356 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 KAT6BQ8WYB5 2073 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 A0A1B0GTH6 734 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 BACH1O14867 736 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 MAGEB3O15480 346 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 ECE2O60344 883 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 VAMP4O75379 141 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 CPA1P15085 419 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 TCP1P17987 556 aaKnown RBP9.28□□□□□ -0.92
TDP1-201ENST00000335725 EMP3P54852 163 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 PRKG1Q13976 671 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 SNX30Q5VWJ9 437 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 SNRNP48Q6IEG0 339 aaKnown RBP9.28□□□□□ -0.92
TDP1-201ENST00000335725 FAM117BQ6P1L5 589 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 HS2ST1Q7LGA3 356 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 OR7G1Q8NGA0 311 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 NMD3Q96D46 503 aaKnown RBP9.28□□□□□ -0.92
TDP1-201ENST00000335725 TMEM237Q96Q45 408 aa9.28□□□□□ -0.92
TDP1-201ENST00000335725 PDS5AQ29RF7 1337 aaKnown RBP9.27□□□□□ -0.92
TDP1-201ENST00000335725 MYOM1P52179 1685 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 ADGRL2O95490 1459 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 LOC105371267A0A1B0GV96 52 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 ARHGAP10A1A4S6 786 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 COG7P83436 770 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 WASHC4Q2M389 1173 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 MYLK3Q32MK0 819 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 FYB2Q5VWT5 728 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 DDX42Q86XP3 938 aaKnown RBP eCLIP9.27□□□□□ -0.93
TDP1-201ENST00000335725 CNTROBQ8N137 903 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 CPLX3Q8WVH0 158 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 ETNK1Q9HBU6 452 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 KIAA1257Q9ULG3 409 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 NOVA2Q9UNW9 492 aaKnown RBP9.27□□□□□ -0.93
TDP1-201ENST00000335725 SIGLEC16A6NMB1 481 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 SPTLC2O15270 562 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 CNOT3O75175 753 aaKnown RBP9.27□□□□□ -0.93
TDP1-201ENST00000335725 TSPAN9O75954 239 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 UBTFL6P0CB48 400 aaPredicted RBP9.27□□□□□ -0.93
TDP1-201ENST00000335725 THOP1P52888 689 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 HAUS3Q68CZ6 603 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 BLOC1S2Q6QNY1 142 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 CEP63Q96MT8 703 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 PSKH2Q96QS6 385 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 TTC1Q99614 292 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 IFT122Q9HBG6 1241 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 DDX43Q9NXZ2 648 aaKnown RBP9.27□□□□□ -0.93
TDP1-201ENST00000335725 SELENONQ9NZV5 590 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 NFU1Q9UMS0 254 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 STX8Q9UNK0 236 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 EPN1Q9Y6I3 576 aaPredicted RBP9.27□□□□□ -0.93
TDP1-201ENST00000335725 TTLL13PA6NNM8 815 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 NDC80O14777 642 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 CTNNA1P35221 906 aaKnown RBP9.27□□□□□ -0.93
TDP1-201ENST00000335725 MTHFSP49914 203 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 PTPN21Q16825 1174 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 CCDC81Q6ZN84 652 aa9.27□□□□□ -0.93
TDP1-201ENST00000335725 ZNF598Q86UK7 904 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms