RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 AHI1Q8N157 1196 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 TNIP2Q8NFZ5 429 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 ADNPQ9H2P0 1102 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 TMEM206Q9H813 350 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 SOX13Q9UN79 622 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 A0A0G2JND7 137 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 POTEFA5A3E0 1075 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 PRPF4O43172 522 aaKnown RBP eCLIP14.9□□□□□ -0.025e-22■□□□□ 10.4
CCDC88A-201ENST00000263630 MAGEA9P43362 315 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 TRADDQ15628 312 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 LVRNQ6Q4G3 990 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 CLCA2Q9UQC9 943 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 TRAF3IP3Q9Y228 551 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 MAP3K13O43283 966 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 CYP26B1Q9NR63 512 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 RBBP7Q16576 425 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 BLIDQ8IZY5 108 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 APPL2Q8NEU8 664 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 PA2G4Q9UQ80 394 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 SNTNA6NMZ2 147 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 DYNLT1P63172 113 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 PTPROQ16827 1216 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 NUGGCQ68CJ6 796 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 FAM83GA6ND36 823 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 DPP8Q6V1X1 898 aaPredicted RBP14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 M0R2C6 588 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 TRAPPC10P48553 1259 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 MIS18BP1Q6P0N0 1132 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 TDRD7Q8NHU6 1098 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 DEPDC7Q96QD5 511 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 FAM129AQ9BZQ8 928 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 GOLPH3LQ9H4A5 285 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 FAM107AO95990 144 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 PDCLQ13371 301 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 STXBP2Q15833 593 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 CFAP73A6NFT4 308 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 ALDH1B1P30837 517 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 TESK2Q96S53 571 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 VPS54Q9P1Q0 977 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 C5orf58C9J3I9 102 aa14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 CNOT6LQ96LI5 555 aaKnown RBP14.89□□□□□ -0.03
CCDC88A-201ENST00000263630 ASAP2O43150 1006 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 MEI1Q5TIA1 1274 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 LRRC8EQ6NSJ5 796 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 KIRREL3Q8IZU9 778 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 PLEKHA8Q96JA3 519 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 AP5M1Q9H0R1 490 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 ZNF215Q9UL58 517 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 TBL3Q12788 808 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 ODR4Q5SWX8 454 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 FOPNLQ96NB1 174 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 GID8Q9NWU2 228 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 EHD2Q9NZN4 543 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 MOSPD1Q9UJG1 213 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 NEMP1O14524 444 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 KLHL38Q2WGJ6 581 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 FAF2Q96CS3 445 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 ZNF274Q96GC6 653 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 DMAP1Q9NPF5 467 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 NFU1Q9UMS0 254 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 TIAM1Q13009 1591 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 ITSN2Q9NZM3 1697 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 SYNGAP1Q96PV0 1343 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 SUPT3HO75486 399 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 LARGE2Q8N3Y3 721 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 SLC7A3Q8WY07 619 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 CCDC22O60826 627 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 KRT40Q6A162 431 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 G3BP2Q9UN86 482 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 COBLO75128 1261 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 EIF2B5Q13144 721 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 CHMP1BQ7LBR1 199 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 GPIHBP1Q8IV16 184 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 TRIM63Q969Q1 353 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 KRCC1Q9NPI7 259 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 ABCC5O15440 1437 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 RTL3Q8N8U3 475 aaKnown RBP14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 SH3KBP1Q96B97 665 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 AK8Q96MA6 479 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 YIPF3Q9GZM5 350 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 UVRAGQ9P2Y5 699 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 LZTS1Q9Y250 596 aa14.88□□□□□ -0.03
CCDC88A-201ENST00000263630 STK25O00506 426 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 SERPINB4P48594 390 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 MRPL50Q8N5N7 158 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 NHEJ1Q9H9Q4 299 aaPredicted RBP14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 CASS4Q9NQ75 786 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 ZNF197O14709 1029 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 ARL4CP56559 192 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 ADCY1Q08828 1119 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 PLEKHM2Q8IWE5 1019 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 ACCSQ96QU6 501 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 PCDH11XQ9BZA7 1347 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 PCDH11YQ9BZA8 1340 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 RWDD4Q6NW29 188 aaKnown RBP14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 TTC17Q96AE7 1141 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 GCNT4Q9P109 453 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 MYH10P35580 1976 aa14.87□□□□□ -0.03
CCDC88A-201ENST00000263630 DIAPH2O60879 1101 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms