RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 BARGINQ6ZT62 677 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 C7orf25Q9BPX7 421 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 RNF14Q9UBS8 474 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 PTPN22Q9Y2R2 807 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 COL4A3BPQ9Y5P4 624 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 TJP1Q07157 1748 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 RGS16O15492 202 aaPredicted RBP15.65■□□□□ 0.1
SDC1-201ENST00000254351 PDHA1P08559 390 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 RCAN1P53805 252 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 GRB10Q13322 594 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 CUL1Q13616 776 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 ALKBH5Q6P6C2 394 aaKnown RBP15.65■□□□□ 0.1
SDC1-201ENST00000254351 TRPM8Q7Z2W7 1104 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 U2AF1L4Q8WU68 220 aaKnown RBP15.65■□□□□ 0.1
SDC1-201ENST00000254351 ECT2Q9H8V3 914 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 DCP1AQ9NPI6 582 aaPredicted RBP15.65■□□□□ 0.1
SDC1-201ENST00000254351 IL17RBQ9NRM6 502 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 BLOC1S4Q9NUP1 217 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 FGFR1OP2Q9NVK5 253 aa15.65■□□□□ 0.1
SDC1-201ENST00000254351 BAZ2AQ9UIF9 1905 aaKnown RBP15.65■□□□□ 0.1
SDC1-201ENST00000254351 ERVV-2B6SEH9 535 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 CREB1P16220 341 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 BICDL1Q6ZP65 573 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 ZNF483Q8TF39 744 aaPredicted RBP15.64■□□□□ 0.09
SDC1-201ENST00000254351 KLHL29Q96CT2 875 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 TMOD4Q9NZQ9 345 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 CEP72Q9P209 647 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 PCDHGC5Q9Y5F6 944 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.64■□□□□ 0.09
SDC1-201ENST00000254351 SSU72P8A0A1W2PR75 194 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 ERMARDQ5T6L9 678 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 MEX3CQ5U5Q3 659 aaKnown RBP15.64■□□□□ 0.09
SDC1-201ENST00000254351 LRIG3Q6UXM1 1119 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 SEPT14Q6ZU15 432 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 ARMC2Q8NEN0 867 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.64■□□□□ 0.09
SDC1-201ENST00000254351 FAM129AQ9BZQ8 928 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 KCNK9Q9NPC2 374 aa15.64■□□□□ 0.09
SDC1-201ENST00000254351 SLC37A4O43826 429 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 RAD21O60216 631 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 KRT16P08779 473 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 MYOCDQ8IZQ8 938 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 KDM4CQ9H3R0 1056 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 SEMA4AQ9H3S1 761 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 SWAP70Q9UH65 585 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 H0Y3Z8 333 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 EIF6P56537 245 aaKnown RBP15.63■□□□□ 0.09
SDC1-201ENST00000254351 NONOQ15233 471 aaKnown RBP eCLIP15.63■□□□□ 0.09
SDC1-201ENST00000254351 ECM1Q16610 540 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 SMIM5Q71RC9 77 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 FBXO25Q8TCJ0 367 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 USP21Q9UK80 565 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 KLRF2D3W0D1 207 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 STXBP3O00186 592 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 MPHOSPH10O00566 681 aaKnown RBP15.63■□□□□ 0.09
SDC1-201ENST00000254351 KRT18P05783 430 aaKnown RBP15.63■□□□□ 0.09
SDC1-201ENST00000254351 TSPY3P0CV98 308 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 TSPY8P0CW00 308 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 MECOMQ03112 1051 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 TNIP1Q15025 636 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 HERC4Q5GLZ8 1057 aaPredicted RBP15.63■□□□□ 0.09
SDC1-201ENST00000254351 SCFD2Q8WU76 684 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 COA7Q96BR5 231 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 ERVK-5Q9HDB9 667 aa15.63■□□□□ 0.09
SDC1-201ENST00000254351 DNAJC8O75937 253 aaPredicted RBP15.62■□□□□ 0.09
SDC1-201ENST00000254351 TNNI2P48788 182 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 USP11P51784 963 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 ADAM9Q13443 819 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 CALCRLQ16602 461 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 EMC10Q5UCC4 262 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 NUGGCQ68CJ6 796 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 DENND2CQ68D51 928 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 PNMA5Q96PV4 448 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 PAIP2Q9BPZ3 127 aaKnown RBP15.62■□□□□ 0.09
SDC1-201ENST00000254351 ZMYND12Q9H0C1 365 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 TCP11X1B4DZS4 312 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 UNC13DQ70J99 1090 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 NEK8Q86SG6 692 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 CCDC26Q8TAB7 109 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 SPIRE2Q8WWL2 714 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 IKZF4Q9H2S9 585 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 SPATS2LQ9NUQ6 558 aaKnown RBP15.62■□□□□ 0.09
SDC1-201ENST00000254351 MAD2L2Q9UI95 211 aa15.62■□□□□ 0.09
SDC1-201ENST00000254351 E9PMD0 336 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 FGFR1OPO95684 399 aaKnown RBP15.61■□□□□ 0.09
SDC1-201ENST00000254351 FKBP3Q00688 224 aaKnown RBP15.61■□□□□ 0.09
SDC1-201ENST00000254351 KCNH2Q12809 1159 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 MTMR3Q13615 1198 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 LACTB2Q53H82 288 aaPredicted RBP15.61■□□□□ 0.09
SDC1-201ENST00000254351 FAM47EQ6ZV65 393 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 SAAL1Q96ER3 474 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 SLC4A9Q96Q91 983 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 TBK1Q9UHD2 729 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 ANAPC4Q9UJX5 808 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 CHD4Q14839 1912 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 FRMPD2Q68DX3 1309 aaPredicted RBP15.61■□□□□ 0.09
SDC1-201ENST00000254351 MYH7BA7E2Y1 1941 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 GFPT2O94808 682 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 PLCG2P16885 1265 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 DDB1Q16531 1140 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms