RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 TUBGCP2Q9BSJ2 902 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 PDCL3Q9H2J4 239 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 SEMA6BQ9H3T3 888 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 COL20A1Q9P218 1284 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 ARP10275 920 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 PTPN14Q15678 1187 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 PAXIP1Q6ZW49 1069 aaPredicted RBP18.67■□□□□ 0.58
LDLR-206ENST00000557958 SAPCD2Q86UD0 394 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 NCAPG2Q86XI2 1143 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 TPH2Q8IWU9 490 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 SMCR8Q8TEV9 937 aaPredicted RBP18.67■□□□□ 0.58
LDLR-206ENST00000557958 BRI3BPQ8WY22 251 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 PURBQ96QR8 312 aaKnown RBP18.67■□□□□ 0.58
LDLR-206ENST00000557958 NACC1Q96RE7 527 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 RMDN3Q96TC7 470 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 BHMT2Q9H2M3 363 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 JADE2Q9NQC1 790 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 KCNH7Q9NS40 1196 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 KCND2Q9NZV8 630 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 TCEAL9Q9UHQ7 104 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 UBIAD1Q9Y5Z9 338 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 PTPRFP10586 1907 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 ZSCAN12O43309 604 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 ZBTB48P10074 688 aaPredicted RBP18.66■□□□□ 0.58
LDLR-206ENST00000557958 ITGB5P18084 799 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 ADKP55263 362 aaKnown RBP18.66■□□□□ 0.58
LDLR-206ENST00000557958 MTMR1Q13613 665 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 BAATQ14032 418 aaPredicted RBP18.66■□□□□ 0.58
LDLR-206ENST00000557958 PTPN21Q16825 1174 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 WDR78Q5VTH9 848 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 ARHGEF16Q5VV41 709 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 SLC30A10Q6XR72 485 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 PPP4R3CPQ6ZMV5 832 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 MAP7D2Q96T17 732 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 ZHX3Q9H4I2 956 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 TBC1D22BQ9NU19 505 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 COL4A3BPQ9Y5P4 624 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 PASKQ96RG2 1323 aa18.66■□□□□ 0.58
LDLR-206ENST00000557958 MFAP3LO75121 409 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 TNNT1P13805 278 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 GAP43P17677 238 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 PSMC6P62333 389 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 RBL2Q08999 1139 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 GIT2Q14161 759 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 PGM5Q15124 567 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 ARSHQ5FYA8 562 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 FKBP15Q5T1M5 1219 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 RGMBQ6NW40 437 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 MB21D1Q8N884 522 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 IQCDQ96DY2 449 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 DYDC2Q96IM9 177 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 TAAR1Q96RJ0 339 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 UNC45AQ9H3U1 944 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 ACAD9Q9H845 621 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 RGL1Q9NZL6 768 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 PNMA3Q9UL41 463 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 SLITRK3O94933 977 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 EIF2AK2P19525 551 aaKnown RBP18.65■□□□□ 0.58
LDLR-206ENST00000557958 FKBP3Q00688 224 aaKnown RBP18.65■□□□□ 0.58
LDLR-206ENST00000557958 CTTNQ14247 550 aaKnown RBP18.65■□□□□ 0.58
LDLR-206ENST00000557958 E4F1Q66K89 784 aaPredicted RBP18.65■□□□□ 0.58
LDLR-206ENST00000557958 REEP2Q9BRK0 252 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 NOC4LQ9BVI4 516 aaKnown RBP18.65■□□□□ 0.58
LDLR-206ENST00000557958 SPATC1LQ9H0A9 340 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 TXNRD2Q9NNW7 524 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 PXMP2Q9NR77 195 aa18.65■□□□□ 0.58
LDLR-206ENST00000557958 PARP14Q460N5 1801 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 GOLGA6L9A6NEM1 432 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 GNA14O95837 355 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 CCND2P30279 289 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 Q3C1V9 767 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 B3GNT9Q6UX72 402 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 MIER3Q7Z3K6 550 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 RASAL3Q86YV0 1011 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 TMEM139Q8IV31 216 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 ANKRD35Q8N283 1001 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 RETREG2Q8NC44 543 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 CEP63Q96MT8 703 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 PDCD2LQ9BRP1 358 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 NUP58Q9BVL2 599 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 TRMT1Q9NXH9 659 aaKnown RBP18.64■□□□□ 0.57
LDLR-206ENST00000557958 RBPJLQ9UBG7 517 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 PAXBP1Q9Y5B6 917 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 PCDHA2Q9Y5H9 948 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 RLFQ13129 1914 aa18.64■□□□□ 0.57
LDLR-206ENST00000557958 COL11A1P12107 1806 aaPredicted RBP18.63■□□□□ 0.57
LDLR-206ENST00000557958 NPHP3-ACAD11A0A0J9YXS1 232 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 DYNC1I1O14576 645 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 TOMM70O94826 608 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 GYPCP04921 128 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 YY1P25490 414 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 CASP14P31944 242 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 RAD51AP2Q09MP3 1159 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 NYAP1Q6ZVC0 841 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 IL31RAQ8NI17 732 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 AGO4Q9HCK5 861 aaKnown RBP18.63■□□□□ 0.57
LDLR-206ENST00000557958 UQCRHLA0A096LP55 91 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 MAFGO15525 162 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 CNMDO75829 334 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 UQCRHP07919 91 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms