RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 TM4SF1P30408 202 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 ZNF844Q08AG5 666 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 DRP2Q13474 957 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 UAP1Q16222 522 aaPredicted RBP19.2■□□□□ 0.66
SYNE3-202ENST00000553340 ZNF571Q7Z3V5 609 aaPredicted RBP19.2■□□□□ 0.66
SYNE3-202ENST00000553340 ZC3H3Q8IXZ2 948 aaKnown RBP19.2■□□□□ 0.66
SYNE3-202ENST00000553340 LRRC57Q8N9N7 239 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.2■□□□□ 0.662e-6■■□□□ 12
SYNE3-202ENST00000553340 KIAA1024Q9UPX6 916 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 SPATA31A1Q5TZJ5 1347 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 CCDC188H7C350 402 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 PLA2G4BP0C869 781 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 MTMR3Q13615 1198 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 PPP1R18Q6NYC8 613 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 C6orf89Q6UWU4 347 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 GPBP1Q86WP2 473 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 DDX42Q86XP3 938 aaKnown RBP eCLIP19.2■□□□□ 0.66
SYNE3-202ENST00000553340 OR2W6PQ8NHA6 318 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 AP1M1Q9BXS5 423 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 GPR75-ASB3A0A0A6YYF3 556 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 GCFC2P16383 781 aaKnown RBP19.19■□□□□ 0.66
SYNE3-202ENST00000553340 PLCG2P16885 1265 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 UBE2SQ16763 222 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 GJA10Q969M2 543 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 GOLPH3Q9H4A6 298 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 SLC12A6Q9UHW9 1150 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 NAGPAQ9UK23 515 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 TMCO5BA8MYB1 307 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 KCNQ2O43526 872 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 ACTN1P12814 892 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 NR2F2P24468 414 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 CACNB1Q02641 598 aaPredicted RBP19.19■□□□□ 0.66
SYNE3-202ENST00000553340 ODF2Q5BJF6 829 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 ALKBH5Q6P6C2 394 aaKnown RBP19.19■□□□□ 0.66
SYNE3-202ENST00000553340 HDAC9Q9UKV0 1011 aa19.19■□□□□ 0.66
SYNE3-202ENST00000553340 NOC2LQ9Y3T9 749 aaKnown RBP19.19■□□□□ 0.66
SYNE3-202ENST00000553340 BHMG1C9JSJ3 638 aaPredicted RBP19.18■□□□□ 0.66
SYNE3-202ENST00000553340 KRIT1O00522 736 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 UCHL3P15374 230 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 SMTNP53814 917 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 GSCP56915 257 aaPredicted RBP19.18■□□□□ 0.66
SYNE3-202ENST00000553340 CCDC121Q6ZUS5 278 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 SMIM5Q71RC9 77 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 CCDC13Q8IYE1 715 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 METTL13Q8N6R0 699 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 LMBR1Q8WVP7 490 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 UBLCP1Q8WVY7 318 aaPredicted RBP19.18■□□□□ 0.66
SYNE3-202ENST00000553340 DDX47Q9H0S4 455 aaKnown RBP19.18■□□□□ 0.66
SYNE3-202ENST00000553340 NARFQ9UHQ1 456 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 PNMA6FA0A0J9YX94 578 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 NPHP3-ACAD11A0A0J9YXS1 232 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 TRAPPC3O43617 180 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 FLOT1O75955 427 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 KRT18P05783 430 aaKnown RBP19.18■□□□□ 0.66
SYNE3-202ENST00000553340 SLC9A1P19634 815 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 PEX26Q7Z412 305 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 CUL5Q93034 780 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 GPCPD1Q9NPB8 672 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 A1CFQ9NQ94 594 aaKnown RBP19.18■□□□□ 0.66
SYNE3-202ENST00000553340 BCCIPQ9P287 314 aaKnown RBP eCLIP19.18■□□□□ 0.66
SYNE3-202ENST00000553340 FBXL5Q9UKA1 691 aa19.18■□□□□ 0.66
SYNE3-202ENST00000553340 CYP11B2P19099 503 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 CLK2P49760 499 aaKnown RBP19.17■□□□□ 0.66
SYNE3-202ENST00000553340 MRPL12P52815 198 aaKnown RBP19.17■□□□□ 0.66
SYNE3-202ENST00000553340 AGBL2Q5U5Z8 902 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 FRMD5Q7Z6J6 570 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 LRRC47Q8N1G4 583 aaKnown RBP19.17■□□□□ 0.66
SYNE3-202ENST00000553340 TPCN2Q8NHX9 752 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 NEUROG2Q9H2A3 272 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 ZHX3Q9H4I2 956 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 SLITRK6Q9H5Y7 841 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 MTMR4Q9NYA4 1195 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 ARMCX3Q9UH62 379 aaPredicted RBP19.17■□□□□ 0.66
SYNE3-202ENST00000553340 CDK5RAP2Q96SN8 1893 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 ANXA13P27216 316 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 KCNQ4P56696 695 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 PPP2R2AP63151 447 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 CCDC26Q8TAB7 109 aa19.17■□□□□ 0.66
SYNE3-202ENST00000553340 ACTR5Q9H9F9 607 aaPredicted RBP19.17■□□□□ 0.66
SYNE3-202ENST00000553340 SRP68Q9UHB9 627 aaKnown RBP19.17■□□□□ 0.66
SYNE3-202ENST00000553340 COL16A1Q07092 1604 aaPredicted RBP19.16■□□□□ 0.66
SYNE3-202ENST00000553340 AFPP02771 609 aaKnown RBP19.16■□□□□ 0.66
SYNE3-202ENST00000553340 PTPROQ16827 1216 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 EXOC3L4Q17RC7 722 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 VPS36Q86VN1 386 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 NAP1L4Q99733 375 aaKnown RBP19.16■□□□□ 0.66
SYNE3-202ENST00000553340 DDX20Q9UHI6 824 aaKnown RBP19.16■□□□□ 0.66
SYNE3-202ENST00000553340 CNTNAP4Q9C0A0 1308 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 POTEB3A0JP26 581 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 POTECB2RU33 542 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 SNHG28P0DPA3 235 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 MAP2K2P36507 400 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 PRKCIP41743 596 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 DPY19L2P1Q6NXN4 242 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 POTEBQ6S5H4 581 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 GPATCH11Q8N954 259 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 JMJD4Q9H9V9 463 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 KLC4Q9NSK0 619 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 AMACRQ9UHK6 382 aa19.16■□□□□ 0.66
SYNE3-202ENST00000553340 PITPNM2Q9BZ72 1349 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms