RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 MSLNLQ96KJ4 702 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 RWDD1Q9H446 243 aaPredicted RBP19.47■□□□□ 0.71
VPS29-204ENST00000548259 SMARCAD1Q9H4L7 1026 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 CDY2AQ9Y6F7 541 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 MYH6P13533 1939 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 RBAK-RBAKDNI3L0D1 243 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 NRIP1P48552 1158 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 RRP1P56182 461 aaKnown RBP19.46■□□□□ 0.71
VPS29-204ENST00000548259 MRPS6P82932 125 aaKnown RBP19.46■□□□□ 0.71
VPS29-204ENST00000548259 ZXDAP98168 799 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 WTAPQ15007 396 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 FBXL6Q8N531 539 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 SPPL3Q8TCT6 385 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 POF1BQ8WVV4 589 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 GPRASP2Q96D09 838 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 AAASQ9NRG9 546 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 SEC63Q9UGP8 760 aaKnown RBP19.46■□□□□ 0.71
VPS29-204ENST00000548259 LRFN2Q9ULH4 789 aa19.46■□□□□ 0.71
VPS29-204ENST00000548259 MRPL42Q9Y6G3 142 aaKnown RBP19.46■□□□□ 0.71
VPS29-204ENST00000548259 U3KPZ7 1027 aaPredicted RBP19.46■□□□□ 0.71
VPS29-204ENST00000548259 MYO7AQ13402 2215 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 MBLAC1A4D2B0 266 aaPredicted RBP19.45■□□□□ 0.7
VPS29-204ENST00000548259 LOC730098B7Z3J9 87 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 ITGB1P05556 798 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 SRGAP2BP0DMP2 458 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 MARK3P27448 753 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 CD52P31358 61 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 B4GALNT3Q6L9W6 998 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 CYB5R4Q7L1T6 521 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 CHD1LQ86WJ1 897 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 KLHL23Q8NBE8 558 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 PRSS33Q8NF86 280 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 MICAL1Q8TDZ2 1067 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 RRP36Q96EU6 259 aaKnown RBP19.45■□□□□ 0.7
VPS29-204ENST00000548259 PHF7Q9BWX1 381 aaPredicted RBP19.45■□□□□ 0.7
VPS29-204ENST00000548259 TLE6Q9H808 572 aa19.45■□□□□ 0.7
VPS29-204ENST00000548259 LAMA4Q16363 1823 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 ZNF318Q5VUA4 2279 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 NLRC5Q86WI3 1866 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 PIK3CDO00329 1044 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 CYTH3O43739 400 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 KIF5BP33176 963 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 UBE3AQ05086 875 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 PAK2Q13177 524 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 CAMK1Q14012 370 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 CBX2Q14781 532 aaPredicted RBP19.44■□□□□ 0.7
VPS29-204ENST00000548259 PLEKHM2Q8IWE5 1019 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 PIBF1Q8WXW3 757 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 FAM49AQ9H0Q0 323 aaPredicted RBP19.44■□□□□ 0.7
VPS29-204ENST00000548259 AZI2Q9H6S1 392 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 USP15Q9Y4E8 981 aaPredicted RBP19.44■□□□□ 0.7
VPS29-204ENST00000548259 SUPT16HQ9Y5B9 1047 aaKnown RBP19.44■□□□□ 0.7
VPS29-204ENST00000548259 PCDHB12Q9Y5F1 795 aa19.44■□□□□ 0.7
VPS29-204ENST00000548259 MAFGO15525 162 aa19.43■□□□□ 0.7
VPS29-204ENST00000548259 SCG2P13521 617 aa19.43■□□□□ 0.7
VPS29-204ENST00000548259 IGBP1P78318 339 aa19.43■□□□□ 0.7
VPS29-204ENST00000548259 SIGLEC14Q08ET2 396 aa19.43■□□□□ 0.7
VPS29-204ENST00000548259 TROAPQ12815 778 aa19.43■□□□□ 0.7
VPS29-204ENST00000548259 PAN2Q504Q3 1202 aaKnown RBP19.43■□□□□ 0.7
VPS29-204ENST00000548259 SPOUT1Q5T280 376 aaKnown RBP19.43■□□□□ 0.7
VPS29-204ENST00000548259 RBM23Q86U06 439 aaKnown RBP19.43■□□□□ 0.7
VPS29-204ENST00000548259 SMC5Q8IY18 1101 aa19.43■□□□□ 0.7
VPS29-204ENST00000548259 CTCFLQ8NI51 663 aaPredicted RBP19.43■□□□□ 0.7
VPS29-204ENST00000548259 CDCA3Q99618 268 aaPredicted RBP19.43■□□□□ 0.7
VPS29-204ENST00000548259 LZTS2Q9BRK4 669 aa19.43■□□□□ 0.7
VPS29-204ENST00000548259 CLEC1BQ9P126 229 aa19.43■□□□□ 0.7
VPS29-204ENST00000548259 TRPV2Q9Y5S1 764 aa19.43■□□□□ 0.7
VPS29-204ENST00000548259 TRIOO75962 3097 aa19.42■□□□□ 0.7
VPS29-204ENST00000548259 ATF7P17544 494 aaPredicted RBP19.42■□□□□ 0.7
VPS29-204ENST00000548259 MTMR1Q13613 665 aa19.42■□□□□ 0.7
VPS29-204ENST00000548259 SLC35G1Q2M3R5 365 aa19.42■□□□□ 0.7
VPS29-204ENST00000548259 ODR4Q5SWX8 454 aa19.42■□□□□ 0.7
VPS29-204ENST00000548259 IER5LQ5T953 404 aa19.42■□□□□ 0.7
VPS29-204ENST00000548259 PDE12Q6L8Q7 609 aaKnown RBP19.42■□□□□ 0.7
VPS29-204ENST00000548259 USP17L6PQ6QN14 398 aa19.42■□□□□ 0.7
VPS29-204ENST00000548259 RPGRIP1Q96KN7 1286 aa19.42■□□□□ 0.7
VPS29-204ENST00000548259 AGO3Q9H9G7 860 aaKnown RBP19.42■□□□□ 0.7
VPS29-204ENST00000548259 TRPC6Q9Y210 931 aa19.42■□□□□ 0.7
VPS29-204ENST00000548259 KCNA2P16389 499 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 DNAJB1P25685 340 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 GNAQP50148 359 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 ADGRD2Q7Z7M1 963 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 ZBTB33Q86T24 672 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 NME8Q8N427 588 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 NCOA7Q8NI08 942 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 RUFY2Q8WXA3 655 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 NEK1Q96PY6 1258 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 MAP3K14Q99558 947 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 SPZ1Q9BXG8 430 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 PADI3Q9ULW8 664 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 BARX2Q9UMQ3 279 aaPredicted RBP19.41■□□□□ 0.7
VPS29-204ENST00000548259 PCDHB7Q9Y5E2 793 aa19.41■□□□□ 0.7
VPS29-204ENST00000548259 C5orf42Q9H799 3197 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 GSTTP1A0A1W2PQM5 241 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 SPDYE3A6NKU9 549 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 MEIS2O14770 477 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 INSRRP14616 1297 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 SMARCA1P28370 1054 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 MARCH8Q5T0T0 291 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 PHOX2BQ99453 314 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 188.1 ms