RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 KRT13P13646 458 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 USP11P51784 963 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 PLTPP55058 493 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 KCNMA1Q12791 1236 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 TRIM68Q6AZZ1 485 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 AGAP11Q8TF27 550 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14□□□□□ -0.17
SFSWAP-209ENST00000540469 C1orf167Q5SNV9 1468 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 F8W031 263 aaPredicted RBP14□□□□□ -0.17
SFSWAP-209ENST00000540469 PPIP5K2O43314 1243 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 EIF3BP55884 814 aaKnown RBP14□□□□□ -0.17
SFSWAP-209ENST00000540469 LACTBP83111 547 aaPredicted RBP14□□□□□ -0.17
SFSWAP-209ENST00000540469 ERMARDQ5T6L9 678 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 TCERG1LQ5VWI1 586 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 VPS36Q86VN1 386 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 SNX29Q8TEQ0 813 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 CRNKL1Q9BZJ0 848 aaKnown RBP14□□□□□ -0.17
SFSWAP-209ENST00000540469 CPVLQ9H3G5 476 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 AZI2Q9H6S1 392 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 BMP2KQ9NSY1 1161 aaPredicted RBP14□□□□□ -0.17
SFSWAP-209ENST00000540469 MCM9Q9NXL9 1143 aa14□□□□□ -0.17
SFSWAP-209ENST00000540469 CFAP73A6NFT4 308 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 UPP2O95045 317 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 KRT18P05783 430 aaKnown RBP13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 GNAQP50148 359 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 KIF2BQ8N4N8 673 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 GLIS3Q8NEA6 775 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 RAB17Q9H0T7 212 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 CCDC169A6NNP5 214 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 AP1G2O75843 785 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 FGGP02679 453 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 ECHS1P30084 290 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 PRPHP41219 470 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 BZW1Q7L1Q6 419 aaKnown RBP13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 NEK8Q86SG6 692 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 NEK9Q8TD19 979 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 ZMYND12Q9H0C1 365 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 PANK4Q9NVE7 773 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 PARP4Q9UKK3 1724 aaKnown RBP13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 TULP1O00294 542 aaPredicted RBP13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 CAVIN4Q5BKX8 364 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 KRT79Q5XKE5 535 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 ALKBH5Q6P6C2 394 aaKnown RBP13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 KRT25Q7Z3Z0 450 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 KCNV2Q8TDN2 545 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 BRIP1Q9BX63 1249 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 RAB34Q9BZG1 259 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 SH3GLB2Q9NR46 395 aa13.99□□□□□ -0.17
SFSWAP-209ENST00000540469 FLT1P17948 1338 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 ADAMTS7Q9UKP4 1686 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 PAEPP09466 180 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 PCP11498 1178 aaKnown RBP13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 KCNJ2P63252 427 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 ATP11AP98196 1134 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 PRCCQ92733 491 aaPredicted RBP13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 DDX12PQ92771 950 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 ECT2Q9H8V3 914 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 C6orf50Q9HD87 102 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 ABCF3Q9NUQ8 709 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 SEPT11Q9NVA2 429 aaKnown RBP13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 BIN2Q9UBW5 565 aaPredicted RBP13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 SMCO2A6NFE2 343 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 RBAK-RBAKDNI3L0D1 243 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 RTN2O75298 545 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 UBOX5O94941 541 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 CHRNDQ07001 517 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 SNX1Q13596 522 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 CALCRLQ16602 461 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 CCDC25Q86WR0 208 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 SCFD2Q8WU76 684 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 ZBTB10Q96DT7 871 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 RIOK1Q9BRS2 568 aaKnown RBP13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 RIC8AQ9NPQ8 531 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 IGF2BP3O00425 579 aaKnown RBP eCLIP13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 FLOT1O75955 427 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 GSTA1P08263 222 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 PTK2Q05397 1052 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 CCDC38Q502W7 563 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 EIF1ADQ8N9N8 165 aaKnown RBP13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 ACTRT1Q8TDG2 376 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 UIMC1Q96RL1 719 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 SLITRK6Q9H5Y7 841 aa13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 SEC63Q9UGP8 760 aaKnown RBP13.98□□□□□ -0.17
SFSWAP-209ENST00000540469 PHRF1Q9P1Y6 1649 aaKnown RBP13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 PVALEFA0A1B0GWK0 134 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 SHBGP04278 402 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 COPB2P35606 906 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 LRRC14Q15048 493 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 CCDC152Q4G0S7 254 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 CRELD2Q6UXH1 353 aaPredicted RBP13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 LRRC55Q6ZSA7 311 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 TBCKQ8TEA7 893 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 IFT74Q96LB3 600 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 JAG2Q9Y219 1238 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 SNX24Q9Y343 169 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 DAAM1Q9Y4D1 1078 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 POTEMA6NI47 508 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 EVI5O60447 810 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 H2AFZP0C0S5 128 aa13.97□□□□□ -0.17
SFSWAP-209ENST00000540469 TSPY3P0CV98 308 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms