RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 MCTP1Q6DN14 999 aa15.1■□□□□ 0.01
VPS28-210ENST00000529182 SMAP1Q8IYB5 467 aaPredicted RBP15.1■□□□□ 0.01
VPS28-210ENST00000529182 DHX38Q92620 1227 aaKnown RBP15.1■□□□□ 0.01
VPS28-210ENST00000529182 WNT8BQ93098 351 aa15.1■□□□□ 0.01
VPS28-210ENST00000529182 SNX21Q969T3 373 aa15.1■□□□□ 0.01
VPS28-210ENST00000529182 NAP1L4Q99733 375 aaKnown RBP15.1■□□□□ 0.01
VPS28-210ENST00000529182 WNT8AQ9H1J5 351 aa15.1■□□□□ 0.01
VPS28-210ENST00000529182 ZNF302Q9NR11 478 aa15.1■□□□□ 0.01
VPS28-210ENST00000529182 PCDHA10Q9Y5I2 948 aa15.1■□□□□ 0.01
VPS28-210ENST00000529182 WDR64B1ANS9 1081 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 H3BQV1 296 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 PSAPP07602 524 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 CSF2RAP15509 400 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 U2AF2P26368 475 aaKnown RBP eCLIP15.09■□□□□ 0.01
VPS28-210ENST00000529182 EPHB4P54760 987 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 IGBP1P78318 339 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 PPFIA1Q13136 1202 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 NBR1Q14596 966 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 MFSD5Q6N075 450 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 PDXDC2PQ6P474 469 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 B3GNT9Q6UX72 402 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 PLPPR4Q7Z2D5 763 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 TRMT1LQ7Z2T5 733 aaKnown RBP15.09■□□□□ 0.01
VPS28-210ENST00000529182 LMBR1Q8WVP7 490 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 ATP6V0A1Q93050 837 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 SCLYQ96I15 445 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 UBE2OQ9C0C9 1292 aaKnown RBP15.09■□□□□ 0.01
VPS28-210ENST00000529182 DISC1Q9NRI5 854 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 GABBR1Q9UBS5 961 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 VAV3Q9UKW4 847 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 TRPC6Q9Y210 931 aa15.09■□□□□ 0.01
VPS28-210ENST00000529182 MARCH6O60337 910 aa15.08■□□□□ 0
VPS28-210ENST00000529182 INSRRP14616 1297 aa15.08■□□□□ 0
VPS28-210ENST00000529182 ATP4AP20648 1035 aa15.08■□□□□ 0
VPS28-210ENST00000529182 MCM7P33993 719 aa15.08■□□□□ 0
VPS28-210ENST00000529182 BMP8BP34820 402 aa15.08■□□□□ 0
VPS28-210ENST00000529182 FPGSQ05932 587 aa15.08■□□□□ 0
VPS28-210ENST00000529182 ZNF174Q15697 407 aa15.08■□□□□ 0
VPS28-210ENST00000529182 GRIK4Q16099 956 aa15.08■□□□□ 0
VPS28-210ENST00000529182 UGCGQ16739 394 aa15.08■□□□□ 0
VPS28-210ENST00000529182 FAM160B1Q5W0V3 765 aa15.08■□□□□ 0
VPS28-210ENST00000529182 MIER3Q7Z3K6 550 aa15.08■□□□□ 0
VPS28-210ENST00000529182 HSCBQ8IWL3 235 aa15.08■□□□□ 0
VPS28-210ENST00000529182 AFAP1L1Q8TED9 768 aa15.08■□□□□ 0
VPS28-210ENST00000529182 TRAPPC12Q8WVT3 735 aa15.08■□□□□ 0
VPS28-210ENST00000529182 ZBTB10Q96DT7 871 aa15.08■□□□□ 0
VPS28-210ENST00000529182 FAM20AQ96MK3 541 aa15.08■□□□□ 0
VPS28-210ENST00000529182 TMEM60Q9H2L4 133 aa15.08■□□□□ 0
VPS28-210ENST00000529182 LAMA2P24043 3122 aaKnown RBP15.08■□□□□ 0
VPS28-210ENST00000529182 TRIP12Q14669 1992 aaPredicted RBP15.07■□□□□ 0
VPS28-210ENST00000529182 POTEB3A0JP26 581 aa15.07■□□□□ 0
VPS28-210ENST00000529182 EML1O00423 815 aa15.07■□□□□ 0
VPS28-210ENST00000529182 TBX3O15119 743 aa15.07■□□□□ 0
VPS28-210ENST00000529182 NEMFO60524 1076 aa15.07■□□□□ 0
VPS28-210ENST00000529182 SFNP31947 248 aa15.07■□□□□ 0
VPS28-210ENST00000529182 TOB1P50616 345 aaPredicted RBP15.07■□□□□ 0
VPS28-210ENST00000529182 JAK3P52333 1124 aa15.07■□□□□ 0
VPS28-210ENST00000529182 ADAM17P78536 824 aa15.07■□□□□ 0
VPS28-210ENST00000529182 PTK7Q13308 1070 aa15.07■□□□□ 0
VPS28-210ENST00000529182 CALCRLQ16602 461 aa15.07■□□□□ 0
VPS28-210ENST00000529182 TRIM71Q2Q1W2 868 aaKnown RBP15.07■□□□□ 0
VPS28-210ENST00000529182 TTC38Q5R3I4 469 aa15.07■□□□□ 0
VPS28-210ENST00000529182 POTEBQ6S5H4 581 aa15.07■□□□□ 0
VPS28-210ENST00000529182 SERINC5Q86VE9 423 aa15.07■□□□□ 0
VPS28-210ENST00000529182 TMEM199Q8N511 208 aa15.07■□□□□ 0
VPS28-210ENST00000529182 INTS4Q96HW7 963 aaKnown RBP15.07■□□□□ 0
VPS28-210ENST00000529182 MAFBQ9Y5Q3 323 aaPredicted RBP15.07■□□□□ 0
VPS28-210ENST00000529182 NRCAMQ92823 1304 aa15.07■□□□□ 0
VPS28-210ENST00000529182 IGSF9BQ9UPX0 1349 aa15.07■□□□□ 0
VPS28-210ENST00000529182 ZNF862O60290 1169 aa15.06■□□□□ 0
VPS28-210ENST00000529182 BAG4O95429 457 aaKnown RBP15.06■□□□□ 0
VPS28-210ENST00000529182 ACRP10323 421 aa15.06■□□□□ 0
VPS28-210ENST00000529182 GNAT1P11488 350 aa15.06■□□□□ 0
VPS28-210ENST00000529182 CKBP12277 381 aa15.06■□□□□ 0
VPS28-210ENST00000529182 SPIRE1Q08AE8 756 aa15.06■□□□□ 0
VPS28-210ENST00000529182 PPP2R5CQ13362 524 aa15.06■□□□□ 0
VPS28-210ENST00000529182 BFSP2Q13515 415 aa15.06■□□□□ 0
VPS28-210ENST00000529182 C9orf50Q5SZB4 431 aa15.06■□□□□ 0
VPS28-210ENST00000529182 MARCH8Q5T0T0 291 aa15.06■□□□□ 0
VPS28-210ENST00000529182 RUFY4Q6ZNE9 571 aa15.06■□□□□ 0
VPS28-210ENST00000529182 C16orf59Q7L2K0 433 aa15.06■□□□□ 0
VPS28-210ENST00000529182 CKAP2LQ8IYA6 745 aa15.06■□□□□ 0
VPS28-210ENST00000529182 BANK1Q8NDB2 785 aa15.06■□□□□ 0
VPS28-210ENST00000529182 CAGE1Q8TC20 777 aa15.06■□□□□ 0
VPS28-210ENST00000529182 NOL7Q9UMY1 257 aaKnown RBP15.06■□□□□ 0
VPS28-210ENST00000529182 VPS37CA5D8V6 355 aaPredicted RBP15.05■□□□□ -0
VPS28-210ENST00000529182 PITPNM1O00562 1244 aa15.05■□□□□ -0
VPS28-210ENST00000529182 TXKP42681 527 aa15.05■□□□□ -0
VPS28-210ENST00000529182 SLC26A2P50443 739 aa15.05■□□□□ -0
VPS28-210ENST00000529182 PPIGQ13427 754 aaKnown RBP eCLIP15.05■□□□□ -06e-8■□□□□ 10.8
VPS28-210ENST00000529182 SHHQ15465 462 aa15.05■□□□□ -0
VPS28-210ENST00000529182 ZNF618Q5T7W0 954 aa15.05■□□□□ -0
VPS28-210ENST00000529182 NCAPH2Q6IBW4 605 aa15.05■□□□□ -0
VPS28-210ENST00000529182 SLFN12Q8IYM2 578 aa15.05■□□□□ -0
VPS28-210ENST00000529182 TDHQ8IZJ6 230 aa15.05■□□□□ -0
VPS28-210ENST00000529182 CCDC155Q8N6L0 562 aa15.05■□□□□ -0
VPS28-210ENST00000529182 RETREG2Q8NC44 543 aa15.05■□□□□ -0
VPS28-210ENST00000529182 ATP8B4Q8TF62 1192 aa15.05■□□□□ -0
VPS28-210ENST00000529182 VWCEQ96DN2 955 aa15.05■□□□□ -0
VPS28-210ENST00000529182 MTMR9Q96QG7 549 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms