RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 IFT20Q8IY31 132 aa14.3□□□□□ -0.12
PTPN7-217ENST00000495688 CASKIN2Q8WXE0 1202 aa14.3□□□□□ -0.12
PTPN7-217ENST00000495688 NUCKS1Q9H1E3 243 aaKnown RBP14.3□□□□□ -0.12
PTPN7-217ENST00000495688 IKZF4Q9H2S9 585 aa14.3□□□□□ -0.12
PTPN7-217ENST00000495688 AIPL1Q9NZN9 384 aa14.3□□□□□ -0.12
PTPN7-217ENST00000495688 PCDHAC2Q9Y5I4 1007 aa14.3□□□□□ -0.12
PTPN7-217ENST00000495688 OPA1O60313 960 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 GCFC2P16383 781 aaKnown RBP14.29□□□□□ -0.12
PTPN7-217ENST00000495688 MAGEA9P43362 315 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 DOK7Q18PE1 504 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 IRF2BP2Q7Z5L9 587 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 PACS2Q86VP3 889 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 RUBCNQ92622 972 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 ANO3Q9BYT9 981 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 DHX36Q9H2U1 1008 aaKnown RBP14.29□□□□□ -0.12
PTPN7-217ENST00000495688 TSKSQ9UJT2 592 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 HDAC9Q9UKV0 1011 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 SAMM50Q9Y512 469 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 ADAMTSL1Q8N6G6 1762 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 RSPH10B2B2RC85 870 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 KCNK3O14649 394 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 CETN3O15182 167 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 EIF3HO15372 352 aaKnown RBP eCLIP14.29□□□□□ -0.12
PTPN7-217ENST00000495688 RAD51CO43502 376 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 GNA14O95837 355 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 RSPH10BP0C881 870 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 TNFRSF8P28908 595 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 KCNA1Q09470 495 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 GPATCH4Q5T3I0 446 aaKnown RBP14.29□□□□□ -0.12
PTPN7-217ENST00000495688 ALS2CLQ60I27 953 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 DPY19L2P1Q6NXN4 242 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 IQCKQ8N0W5 287 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 RBM46Q8TBY0 533 aaKnown RBP14.29□□□□□ -0.12
PTPN7-217ENST00000495688 PIK3R5Q8WYR1 880 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 DNAJC18Q9H819 358 aa14.29□□□□□ -0.12
PTPN7-217ENST00000495688 AJAP1Q9UKB5 411 aaPredicted RBP14.29□□□□□ -0.12
PTPN7-217ENST00000495688 BBOX1O75936 387 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 MYBP10242 640 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 UCHL3P15374 230 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 CYP4A11Q02928 519 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 SPIRE1Q08AE8 756 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 TCP10Q12799 353 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 NNTQ13423 1086 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 GLE1Q53GS7 698 aaKnown RBP14.28□□□□□ -0.12
PTPN7-217ENST00000495688 DCAF17Q5H9S7 520 aaPredicted RBP14.28□□□□□ -0.12
PTPN7-217ENST00000495688 CDC42EP5Q6NZY7 148 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 GJB7Q6PEY0 223 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 SLC30A10Q6XR72 485 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 SFR1Q86XK3 245 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 REEP2Q9BRK0 252 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 MEIS2O14770 477 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 CASP4P49662 377 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 GIT2Q14161 759 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 CFAP58Q5T655 872 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 LUC7LQ9NQ29 371 aaKnown RBP14.28□□□□□ -0.12
PTPN7-217ENST00000495688 FRMD3A2A2Y4 597 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 AKAP3O75969 853 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 EPB41P11171 864 aaKnown RBP14.28□□□□□ -0.12
PTPN7-217ENST00000495688 POLD1P28340 1107 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 DDR1Q08345 913 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 ARHGAP27Q6ZUM4 889 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 USP38Q8NB14 1042 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 SPAG5Q96R06 1193 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 RNF14Q9UBS8 474 aa14.28□□□□□ -0.12
PTPN7-217ENST00000495688 ARMCX3Q9UH62 379 aaPredicted RBP14.28□□□□□ -0.12
PTPN7-217ENST00000495688 SFI1A8K8P3 1242 aa14.27□□□□□ -0.12
PTPN7-217ENST00000495688 SPATA31C1P0DKV0 1188 aa14.27□□□□□ -0.12
PTPN7-217ENST00000495688 EEF2P13639 858 aaKnown RBP14.27□□□□□ -0.12
PTPN7-217ENST00000495688 PON1P27169 355 aa14.27□□□□□ -0.12
PTPN7-217ENST00000495688 NOP2P46087 812 aaKnown RBP14.27□□□□□ -0.12
PTPN7-217ENST00000495688 PAK2Q13177 524 aa14.27□□□□□ -0.12
PTPN7-217ENST00000495688 CDC37Q16543 378 aaPredicted RBP14.27□□□□□ -0.12
PTPN7-217ENST00000495688 USH1GQ495M9 461 aa14.27□□□□□ -0.12
PTPN7-217ENST00000495688 TCERG1LQ5VWI1 586 aa14.27□□□□□ -0.12
PTPN7-217ENST00000495688 DDX42Q86XP3 938 aaKnown RBP eCLIP14.27□□□□□ -0.12
PTPN7-217ENST00000495688 ZC3H3Q8IXZ2 948 aaKnown RBP14.27□□□□□ -0.12
PTPN7-217ENST00000495688 CYP2W1Q8TAV3 490 aa14.27□□□□□ -0.12
PTPN7-217ENST00000495688 AP1M1Q9BXS5 423 aa14.27□□□□□ -0.12
PTPN7-217ENST00000495688 FAM86B1E9PN63 330 aa14.27□□□□□ -0.13
PTPN7-217ENST00000495688 CLIC2O15247 247 aa14.27□□□□□ -0.13
PTPN7-217ENST00000495688 ZEB2O60315 1214 aa14.27□□□□□ -0.13
PTPN7-217ENST00000495688 FAM86B2P0C5J1 330 aa14.27□□□□□ -0.13
PTPN7-217ENST00000495688 ARHGAP4P98171 946 aa14.27□□□□□ -0.13
PTPN7-217ENST00000495688 APOBEC3HQ6NTF7 200 aaKnown RBP14.27□□□□□ -0.13
PTPN7-217ENST00000495688 ETNPPLQ8TBG4 499 aa14.27□□□□□ -0.13
PTPN7-217ENST00000495688 KCNQ5Q9NR82 932 aa14.27□□□□□ -0.13
PTPN7-217ENST00000495688 SWAP70Q9UH65 585 aa14.27□□□□□ -0.13
PTPN7-217ENST00000495688 GUCY1A3Q02108 690 aa14.26□□□□□ -0.13
PTPN7-217ENST00000495688 RPS6KA1Q15418 735 aa14.26□□□□□ -0.13
PTPN7-217ENST00000495688 EXOC3L4Q17RC7 722 aa14.26□□□□□ -0.13
PTPN7-217ENST00000495688 KNOP1Q1ED39 458 aaKnown RBP14.26□□□□□ -0.13
PTPN7-217ENST00000495688 EDRF1Q3B7T1 1238 aa14.26□□□□□ -0.13
PTPN7-217ENST00000495688 RNPC3Q96LT9 517 aaKnown RBP14.26□□□□□ -0.13
PTPN7-217ENST00000495688 NAGPAQ9UK23 515 aa14.26□□□□□ -0.13
PTPN7-217ENST00000495688 SMCHD1A6NHR9 2005 aa14.26□□□□□ -0.13
PTPN7-217ENST00000495688 EBAG9O00559 213 aa14.26□□□□□ -0.13
PTPN7-217ENST00000495688 CEP104O60308 925 aa14.26□□□□□ -0.13
PTPN7-217ENST00000495688 AFPP02771 609 aaKnown RBP14.26□□□□□ -0.13
PTPN7-217ENST00000495688 USP11P51784 963 aa14.26□□□□□ -0.13
PTPN7-217ENST00000495688 ERVK-9P63128 1117 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms