RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 MCM8Q9UJA3 840 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 PCDHA6Q9UN73 950 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 PCDHA8Q9Y5H6 950 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 PNPLA7Q6ZV29 1317 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 A6NNZ2 444 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 MARCH6O60337 910 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 SCTRP47872 440 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 MAN2A1Q16706 1144 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 TUBB8Q3ZCM7 444 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 SUSD4Q5VX71 490 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 CNNM4Q6P4Q7 775 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 SPATS2Q86XZ4 545 aaKnown RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 ARFGAP2Q8N6H7 521 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 MARCH10Q8NA82 808 aaPredicted RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 PNMA1Q8ND90 353 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 MIEF2Q96C03 454 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 HVCN1Q96D96 273 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 TMBIM4Q9HC24 238 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 TFCP2L1Q9NZI6 479 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 MYO5AQ9Y4I1 1855 aaKnown RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 TRPM3Q9HCF6 1732 aaPredicted RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 ATRNO75882 1429 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 MYMKA6NI61 221 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 BUB1BO60566 1050 aaPredicted RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 CTNND1O60716 968 aaKnown RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 PRLRP16471 622 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 KIF5BP33176 963 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 EMP3P54852 163 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 DHX9Q08211 1270 aaKnown RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 MYO1EQ12965 1108 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 CDC37Q16543 378 aaPredicted RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 PREPLQ4J6C6 727 aaPredicted RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 FAM83BQ5T0W9 1011 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 PDXDC1Q6P996 788 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 ZNF662Q6ZS27 426 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 SV2BQ7L1I2 683 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 CCDC84Q86UT8 332 aaPredicted RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 KSR1Q8IVT5 923 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 SLC44A5Q8NCS7 719 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 CALML4Q96GE6 196 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 TAF1DQ9H5J8 278 aaPredicted RBP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 MKNK2Q9HBH9 465 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 POTEMA6NI47 508 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 KRIT1O00522 736 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 SART1O43290 800 aaKnown RBP10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 ACTN1P12814 892 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 MMP14P50281 582 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 APLP1P51693 650 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 DDR1Q08345 913 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 ZNF844Q08AG5 666 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 UAP1Q16222 522 aaPredicted RBP10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 ANKRD20A8PQ5CZ79 823 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 GKAP1Q5VSY0 366 aaPredicted RBP10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 CCDC24Q8N4L8 307 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 STK32AQ8WU08 396 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 BAP1Q92560 729 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 NLRP3Q96P20 1036 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 CD2APQ9Y5K6 639 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 TLR2O60603 784 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 DDAH1O94760 285 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 OR52Z1P0C646 297 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 IL2RBP14784 551 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 SLCO1A2P46721 670 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 LLGL1Q15334 1064 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 FAM98CQ17RN3 349 aaKnown RBP10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 NAIF1Q69YI7 327 aaPredicted RBP10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 BICDL1Q6ZP65 573 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 WHAMMQ8TF30 809 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 SGSM3Q96HU1 749 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 RIOK1Q9BRS2 568 aaKnown RBP10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 PNMA2Q9UL42 364 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 C1orf167Q5SNV9 1468 aa10.81□□□□□ -0.68
PTCHD4-202ENST00000398738 ARHGAP33O14559 1287 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 TTI1O43156 1089 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 UPP2O95045 317 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 VIMP08670 466 aaKnown RBP10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 AMPD3Q01432 767 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 GLE1Q53GS7 698 aaKnown RBP10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 USP38Q8NB14 1042 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 STAMBPL1Q96FJ0 436 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 TMEM260Q9NX78 707 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 GRID2IPA4D2P6 1211 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 CLGNO14967 610 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 PPP2R2AP63151 447 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 KCNMA1Q12791 1236 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 MGARPQ8TDB4 240 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 TRIM51Q9BSJ1 452 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 A0A1W2PQJ5 194 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 RCAN1P53805 252 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 ITIH3Q06033 890 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 HGSNATQ68CP4 663 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 SPTY2D1Q68D10 685 aaPredicted RBP10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 MAEAQ7L5Y9 396 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 SPAG5Q96R06 1193 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 ELAC2Q9BQ52 826 aaKnown RBP10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 NUDT12Q9BQG2 462 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 CCSER1Q9C0I3 900 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 UBA5Q9GZZ9 404 aa10.8□□□□□ -0.68
PTCHD4-202ENST00000398738 SMCO2A6NFE2 343 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms