RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NOC3LQ8WTT2 800 aaKnown RBP20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 NELFBQ8WX92 580 aa20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 ZFP91Q96JP5 570 aaPredicted RBP20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 SENP7Q9BQF6 1050 aa20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 PDCL3Q9H2J4 239 aa20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 ZCCHC17Q9NP64 241 aaKnown RBP20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 PKD2L1Q9P0L9 805 aa20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 BTBD19C9JJ37 291 aa20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 DDX39AO00148 427 aaKnown RBP20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 TNNT1P13805 278 aa20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 ICAM3P32942 547 aa20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 ITGB3BPQ13352 177 aaPredicted RBP20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 FAM133AQ8N9E0 248 aa20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 BRI3BPQ8WY22 251 aa20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 PANK4Q9NVE7 773 aa20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 FANCLQ9NW38 375 aa20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 RGL1Q9NZL6 768 aa20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 LCTP09848 1927 aa20.21■□□□□ 0.83
CCDC88C-203ENST00000389856 MANSC4A6NHS7 340 aaPredicted RBP20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 SPATA31C2B4DYI2 1134 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 CD44P16070 742 aaKnown RBP20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 CYP11B2P19099 503 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 PRCPP42785 496 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 CTTNQ14247 550 aaKnown RBP20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 SYCP1Q15431 976 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 WDR78Q5VTH9 848 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 KCNV1Q6PIU1 500 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 VSTM4Q8IW00 320 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 SMYD4Q8IYR2 804 aaPredicted RBP20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 CCDC43Q96MW1 224 aaKnown RBP20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 PURBQ96QR8 312 aaKnown RBP20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 CTAGE1Q96RT6 745 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 LXNQ9BS40 222 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 BHMT2Q9H2M3 363 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 TXNRD2Q9NNW7 524 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 MORF4L1Q9UBU8 362 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 GDAQ9Y2T3 454 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 TBCAO75347 108 aaKnown RBP20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 LYPLA2O95372 231 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 GAP43P17677 238 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 QARSP47897 775 aaKnown RBP20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 CST9Q5W186 159 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 CCAR2Q8N163 923 aaKnown RBP20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 DNAJC19Q96DA6 116 aa20.2■□□□□ 0.82
CCDC88C-203ENST00000389856 KIAA1217Q5T5P2 1943 aa20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 CYP2C8P10632 490 aa20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 ZNF18P17022 549 aa20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 EDNRBP24530 442 aa20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 YY1P25490 414 aa20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 ZNF157P51786 506 aaPredicted RBP20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 CNTN2Q02246 1040 aa20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 MKRN3Q13064 507 aaKnown RBP20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 PTPN14Q15678 1187 aa20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 NYAP1Q6ZVC0 841 aa20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 TRMT44Q8IYL2 757 aaKnown RBP20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 GUF1Q8N442 669 aaKnown RBP20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 JPH1Q9HDC5 661 aaPredicted RBP20.19■□□□□ 0.82
CCDC88C-203ENST00000389856 ARHGEF35A5YM69 484 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 STRNO43815 780 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 FGFR1OPO95684 399 aaKnown RBP20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 TGFB3P10600 412 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 PSMC5P62195 406 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 COASYQ13057 564 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 FAM26FQ5R3K3 315 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 FOXR2Q6PJQ5 311 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 FAM114A1Q8IWE2 563 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 ABRAQ8N0Z2 381 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 ATP6V0A1Q93050 837 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 DBR1Q9UK59 544 aaKnown RBP20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 PCDHA10Q9Y5I2 948 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 COL4A3BPQ9Y5P4 624 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 IVNS1ABPQ9Y6Y0 642 aa20.18■□□□□ 0.82
CCDC88C-203ENST00000389856 FRMD3A2A2Y4 597 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 ASB14A6NK59 587 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 CTIFO43310 598 aaKnown RBP20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 PSAPP07602 524 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 ATP1A3P13637 1013 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 KCNA2P16389 499 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 CCNE1P24864 410 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 STX17P56962 302 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 INHBEP58166 350 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 PSMC6P62333 389 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 ARID5BQ14865 1188 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 Q3C1V9 767 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 FILIP1LQ4L180 1135 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 HERC4Q5GLZ8 1057 aaPredicted RBP20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 CEP135Q66GS9 1140 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 ARMCX5Q6P1M9 558 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 P2RX5Q93086 422 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 C16orf45Q96MC5 204 aaPredicted RBP20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 TSG101Q99816 390 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 SLC9A2Q9UBY0 812 aa20.17■□□□□ 0.82
CCDC88C-203ENST00000389856 DNAJC25-GNG10A0A024R161 153 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 SOWAHBA6NEL2 793 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 RIOK3O14730 519 aaKnown RBP20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 EHHADHQ08426 723 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 STK4Q13043 487 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 RGMBQ6NW40 437 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 MIS18BP1Q6P0N0 1132 aa20.16■□□□□ 0.82
CCDC88C-203ENST00000389856 C4orf19Q8IY42 314 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms