RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 PCDHA5Q9Y5H7 936 aa6.21□□□□□ -1.42
CCDC54-201ENST00000261058 RASSF10A6NK89 507 aa6.2□□□□□ -1.42
CCDC54-201ENST00000261058 HIP1RO75146 1068 aa6.2□□□□□ -1.42
CCDC54-201ENST00000261058 IGFBP6P24592 240 aaPredicted RBP6.2□□□□□ -1.42
CCDC54-201ENST00000261058 THBS2P35442 1172 aa6.2□□□□□ -1.42
CCDC54-201ENST00000261058 FNTBP49356 437 aa6.2□□□□□ -1.42
CCDC54-201ENST00000261058 SRSF3P84103 164 aaKnown RBP6.2□□□□□ -1.42
CCDC54-201ENST00000261058 TEPPQ6URK8 271 aa6.2□□□□□ -1.42
CCDC54-201ENST00000261058 TOE1Q96GM8 510 aaKnown RBP6.2□□□□□ -1.42
CCDC54-201ENST00000261058 C16orf92Q96LL3 132 aa6.2□□□□□ -1.42
CCDC54-201ENST00000261058 EPB41L4BQ9H329 900 aa6.2□□□□□ -1.42
CCDC54-201ENST00000261058 DDX56Q9NY93 547 aaKnown RBP6.2□□□□□ -1.42
CCDC54-201ENST00000261058 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.19□□□□□ -1.42
CCDC54-201ENST00000261058 SEMA7AO75326 666 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 CYP17A1P05093 508 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 NCAM1P13591 858 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 SLC9A1P19634 815 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 KIF11P52732 1056 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 GRIN1Q05586 938 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 CACNB2Q08289 660 aaPredicted RBP6.19□□□□□ -1.42
CCDC54-201ENST00000261058 LRRC32Q14392 662 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 TERF2Q15554 542 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 ZNF174Q15697 407 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 ATP13A4Q4VNC1 1196 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 ESRP1Q6NXG1 681 aaKnown RBP6.19□□□□□ -1.42
CCDC54-201ENST00000261058 EP400NLQ6ZTU2 488 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 LDHDQ86WU2 507 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 NSUN3Q9H649 340 aaKnown RBP6.19□□□□□ -1.42
CCDC54-201ENST00000261058 ZMAT4Q9H898 229 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 GCM1Q9NP62 436 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 NGRNQ9NPE2 291 aaKnown RBP6.19□□□□□ -1.42
CCDC54-201ENST00000261058 RIC8BQ9NVN3 520 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 BTBD7Q9P203 1132 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 WASF3Q9UPY6 502 aa6.19□□□□□ -1.42
CCDC54-201ENST00000261058 ULK1O75385 1050 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 KRT37O76014 449 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 C8BP07358 591 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 PTX3P26022 381 aaPredicted RBP6.18□□□□□ -1.42
CCDC54-201ENST00000261058 AOAHP28039 575 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 CDR1P51861 262 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 DBPQ10586 325 aaPredicted RBP6.18□□□□□ -1.42
CCDC54-201ENST00000261058 EPHA7Q15375 998 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 CD276Q5ZPR3 534 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 C11orf74Q86VG3 221 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 IGDCC3Q8IVU1 814 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 SLC5A5Q92911 643 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 FOXRED1Q96CU9 486 aaPredicted RBP6.18□□□□□ -1.42
CCDC54-201ENST00000261058 DIRC2Q96SL1 478 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 PUS7LQ9H0K6 701 aaKnown RBP6.18□□□□□ -1.42
CCDC54-201ENST00000261058 DCP1AQ9NPI6 582 aaPredicted RBP6.18□□□□□ -1.42
CCDC54-201ENST00000261058 HOMER2Q9NSB8 354 aa6.18□□□□□ -1.42
CCDC54-201ENST00000261058 LRRC10BA6NIK2 292 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 PPM1GO15355 546 aaPredicted RBP6.17□□□□□ -1.42
CCDC54-201ENST00000261058 FOXP2O15409 715 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 ATF2P15336 505 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 EVA1CP58658 441 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 TARBP2Q15633 366 aaKnown RBP6.17□□□□□ -1.42
CCDC54-201ENST00000261058 B3GNT8Q7Z7M8 397 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 RTN4RL1Q86UN2 441 aaPredicted RBP6.17□□□□□ -1.42
CCDC54-201ENST00000261058 ZNF610Q8N9Z0 462 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 CLRN3Q8NCR9 226 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 ASB15Q8WXK1 588 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 TRIM8Q9BZR9 551 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 PCIF1Q9H4Z3 704 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 SLC5A4Q9NY91 659 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 ASB1Q9Y576 335 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 WASHC2CQ9Y4E1 1318 aa6.17□□□□□ -1.42
CCDC54-201ENST00000261058 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.16□□□□□ -1.42
CCDC54-201ENST00000261058 N4BP3O15049 544 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 MPIG6BO95866 241 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 PDGFRBP09619 1106 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 STAT5AP42229 794 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 SESN3P58005 492 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 TMPRSS15P98073 1019 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 EXOSC10Q01780 885 aaKnown RBP6.16□□□□□ -1.42
CCDC54-201ENST00000261058 MESP2Q0VG99 397 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 MLANAQ16655 118 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 BRDTQ58F21 947 aaPredicted RBP6.16□□□□□ -1.42
CCDC54-201ENST00000261058 BROXQ5VW32 411 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 ZZZ3Q8IYH5 903 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 FAM26EQ8N5C1 309 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 FBXO15Q8NCQ5 510 aaPredicted RBP6.16□□□□□ -1.42
CCDC54-201ENST00000261058 MZB1Q8WU39 189 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 KCNK12Q9HB15 430 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 SIRT5Q9NXA8 310 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 TTBK1Q5TCY1 1321 aaPredicted RBP6.16□□□□□ -1.42
CCDC54-201ENST00000261058 PRAMEF25A6NGN4 478 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 ZNF839A8K0R7 811 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 GOLGA6L22H0YM25 854 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 PRKD3O94806 890 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 MMEP08473 750 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 HSP90B1P14625 803 aaKnown RBP6.16□□□□□ -1.42
CCDC54-201ENST00000261058 MC3RP41968 323 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 GUCY2FP51841 1108 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 ERVK-21P61565 698 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 NKX3-2P78367 333 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 FAPQ12884 760 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 MTMR1Q13613 665 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 TMEM132BQ14DG7 1078 aa6.16□□□□□ -1.42
CCDC54-201ENST00000261058 DDB1Q16531 1140 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms