RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CA3P07451 260 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 RPS6KB1P23443 525 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 ADD1P35611 737 aaKnown RBP21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 SP4Q02446 784 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 APOBRQ0VD83 1088 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 PFKFB3Q16875 520 aaPredicted RBP21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 TYW1BQ6NUM6 668 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 CCDC12Q8WUD4 166 aaPredicted RBP21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 BRF1Q92994 677 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 SMARCAD1Q9H4L7 1026 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 SETD4Q9NVD3 440 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 ERAP1Q9NZ08 941 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 EYSQ5T1H1 3165 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 NFASCO94856 1347 aa21.8■■□□□ 1.08
CCDC28A-203ENST00000617445 GSTTP1A0A1W2PQM5 241 aa21.79■■□□□ 1.08
CCDC28A-203ENST00000617445 TLL1O43897 1013 aa21.79■■□□□ 1.08
CCDC28A-203ENST00000617445 ADAM17P78536 824 aa21.79■■□□□ 1.08
CCDC28A-203ENST00000617445 TRIM50Q86XT4 487 aa21.79■■□□□ 1.08
CCDC28A-203ENST00000617445 TNPO1Q92973 898 aaKnown RBP21.79■■□□□ 1.08
CCDC28A-203ENST00000617445 ANO3Q9BYT9 981 aa21.79■■□□□ 1.08
CCDC28A-203ENST00000617445 JPH1Q9HDC5 661 aaPredicted RBP21.79■■□□□ 1.08
CCDC28A-203ENST00000617445 KCNH7Q9NS40 1196 aa21.79■■□□□ 1.08
CCDC28A-203ENST00000617445 CHD7Q9P2D1 2997 aa21.79■■□□□ 1.08
CCDC28A-203ENST00000617445 ESYT2A0FGR8 921 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 SCG2P13521 617 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 CPA1P15085 419 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 IGFBP4P22692 258 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 SREBF1P36956 1147 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 CLK2P49760 499 aaKnown RBP21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 ADGRE1Q14246 886 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 MBTPS1Q14703 1052 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 CEP55Q53EZ4 464 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 TAF2Q6P1X5 1199 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 NIPA1Q7RTP0 329 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 RPAINQ86UA6 219 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 SDF4Q9BRK5 362 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 ZBED2Q9BTP6 218 aa21.78■■□□□ 1.08
CCDC28A-203ENST00000617445 MEIS1O00470 390 aa21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 PRPF3O43395 683 aaKnown RBP21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 RPLP2P05387 115 aaKnown RBP21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 POU3F3P20264 500 aaPredicted RBP21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 EVCP57679 992 aa21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 ARHGAP4P98171 946 aa21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 AKAP17AQ02040 695 aaKnown RBP21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 PLEKHG4Q58EX7 1191 aa21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 LMBR1Q8WVP7 490 aa21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 GLG1Q92896 1179 aa21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 ZMYND12Q9H0C1 365 aa21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 SLC9A2Q9UBY0 812 aa21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 TELO2Q9Y4R8 837 aa21.77■■□□□ 1.08
CCDC28A-203ENST00000617445 PTPRSQ13332 1948 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 GJB5O95377 273 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 GNA11P29992 359 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 TAP1Q03518 808 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 FAM26DQ5JW98 314 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 RSPH3Q86UC2 560 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 DBF4BQ8NFT6 615 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 SEPT8Q92599 483 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 RAD9AQ99638 391 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 AZI2Q9H6S1 392 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 C6orf50Q9HD87 102 aa21.76■■□□□ 1.07
CCDC28A-203ENST00000617445 RRN3P2A6NIE6 340 aa21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 ZNF76P36508 570 aa21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 DEFB103AP81534 67 aa21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 PPFIA1Q13136 1202 aa21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 RUFY3Q7L099 469 aa21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 USP38Q8NB14 1042 aa21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 SYMPKQ92797 1274 aaKnown RBP21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 COL25A1Q9BXS0 654 aaPredicted RBP21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 PKD2L1Q9P0L9 805 aa21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 MICAL3Q7RTP6 2002 aa21.75■■□□□ 1.07
CCDC28A-203ENST00000617445 TTC28Q96AY4 2481 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 TRANK1O15050 2925 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 GTPBP6O43824 516 aaPredicted RBP21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 AMHP03971 560 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 CYP3A4P08684 503 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 TCTN1Q2MV58 587 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 ERICH6BQ5W0A0 696 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 PLPPR4Q7Z2D5 763 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 CYP2W1Q8TAV3 490 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 BICD2Q8TD16 824 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 APBB2Q92870 758 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 RNF26Q9BY78 433 aaPredicted RBP21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 TM6SF1Q9BZW5 370 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 TSPYL2Q9H2G4 693 aaPredicted RBP21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 ZSWIM6Q9HCJ5 1215 aa21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 AGO4Q9HCK5 861 aaKnown RBP21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 PRRC2BQ5JSZ5 2229 aaKnown RBP21.74■■□□□ 1.07
CCDC28A-203ENST00000617445 MBLAC1A4D2B0 266 aaPredicted RBP21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 ARP10275 920 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 IFNAR1P17181 557 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 SLC26A2P50443 739 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 MKRN4PQ13434 485 aaPredicted RBP21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 GRIK4Q16099 956 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 PKN1Q16512 942 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 REXO1Q8N1G1 1221 aaKnown RBP21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 CCDC148Q8NFR7 591 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 ATXN2LQ8WWM7 1075 aaKnown RBP21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 PGBD1Q96JS3 809 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 TMEM260Q9NX78 707 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms