RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 HIPK3Q9H422 1215 aa19.6■□□□□ 0.73
SHKBP1-212ENST00000596163 HDAC6Q9UBN7 1215 aa19.6■□□□□ 0.73
SHKBP1-212ENST00000596163 GTF2IRD1Q9UHL9 959 aa19.6■□□□□ 0.73
SHKBP1-212ENST00000596163 GCFC2P16383 781 aaKnown RBP19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 ACTR2P61160 394 aa19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 FPGSQ05932 587 aa19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 ITGB3BPQ13352 177 aaPredicted RBP19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 INF2Q27J81 1249 aa19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 PIK3AP1Q6ZUJ8 805 aa19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 NEK8Q86SG6 692 aa19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 CCDC155Q8N6L0 562 aa19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 RETREG2Q8NC44 543 aa19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 PPP1R12CQ9BZL4 782 aa19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 ERAP1Q9NZ08 941 aa19.59■□□□□ 0.73
SHKBP1-212ENST00000596163 C17orf102A2RUQ5 167 aa19.58■□□□□ 0.72
SHKBP1-212ENST00000596163 KRT76Q01546 638 aa19.58■□□□□ 0.72
SHKBP1-212ENST00000596163 BFSP2Q13515 415 aa19.58■□□□□ 0.72
SHKBP1-212ENST00000596163 DIS3L2Q8IYB7 885 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-212ENST00000596163 OXER1Q8TDS5 423 aa19.58■□□□□ 0.72
SHKBP1-212ENST00000596163 RIT2Q99578 217 aa19.58■□□□□ 0.72
SHKBP1-212ENST00000596163 CEP290O15078 2479 aa19.58■□□□□ 0.72
SHKBP1-212ENST00000596163 EMSYQ7Z589 1322 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 DDX39AO00148 427 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 DHX15O43143 795 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 LGR5O75473 907 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 ATG7O95352 703 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 CYP2C9P11712 490 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 FOSBP53539 338 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 PPIGQ13427 754 aaKnown RBP eCLIP19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 LETM2Q2VYF4 491 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 FAM160B1Q5W0V3 765 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 PPP4R3AQ6IN85 833 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 GDF6Q6KF10 455 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 ZNF746Q6NUN9 644 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 MIS18BP1Q6P0N0 1132 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 PLPPR4Q7Z2D5 763 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 SMAP1Q8IYB5 467 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 PPP1R13LQ8WUF5 828 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 LENG9Q96B70 501 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 MBOAT7Q96N66 472 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 NOC4LQ9BVI4 516 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 DDX25Q9UHL0 483 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 SCN10AQ9Y5Y9 1956 aa19.57■□□□□ 0.72
SHKBP1-212ENST00000596163 BTBD18B2RXH4 712 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 MSH4O15457 936 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 EDIL3O43854 480 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 TDP2O95551 362 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 SMIM10L2AP0DMW4 78 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 SMIM10L2BP0DMW5 78 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 ITGB8P26012 769 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 SLC26A2P50443 739 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 STAT5BP51692 787 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 NR5A1Q13285 461 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 HABP4Q5JVS0 413 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 CAGE1Q8TC20 777 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 SLC5A5Q92911 643 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 TEKT3Q9BXF9 490 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 TELO2Q9Y4R8 837 aa19.56■□□□□ 0.72
SHKBP1-212ENST00000596163 NRCAMQ92823 1304 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 PITPNM1O00562 1244 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 BACH1O14867 736 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 MARCH6O60337 910 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 CCNT1O60563 726 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 GAS7O60861 476 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 PSAPP07602 524 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 CYP2C18P33260 490 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 PTK7Q13308 1070 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 GNL2Q13823 731 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 LRCH2Q5VUJ6 765 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 ABHD15Q6UXT9 468 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 TRIM50Q86XT4 487 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 RPUSD2Q8IZ73 545 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 TDHQ8IZJ6 230 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 FBXO18Q8NFZ0 1043 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 RNPEPQ9H4A4 650 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 PCDHA10Q9Y5I2 948 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 MYH7BA7E2Y1 1941 aa19.55■□□□□ 0.72
SHKBP1-212ENST00000596163 CD2BP2O95400 341 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-212ENST00000596163 CCNE2O96020 404 aa19.54■□□□□ 0.72
SHKBP1-212ENST00000596163 GUCY1B3Q02153 619 aa19.54■□□□□ 0.72
SHKBP1-212ENST00000596163 TNFRSF25Q93038 417 aa19.54■□□□□ 0.72
SHKBP1-212ENST00000596163 ATP6V0A1Q93050 837 aa19.54■□□□□ 0.72
SHKBP1-212ENST00000596163 FAM20AQ96MK3 541 aa19.54■□□□□ 0.72
SHKBP1-212ENST00000596163 UIMC1Q96RL1 719 aa19.54■□□□□ 0.72
SHKBP1-212ENST00000596163 FOXP1Q9H334 677 aaPredicted RBP19.54■□□□□ 0.72
SHKBP1-212ENST00000596163 SAMM50Q9Y512 469 aa19.54■□□□□ 0.72
SHKBP1-212ENST00000596163 IGKV6D-21A0A0A0MT36 114 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 RRN3P2A6NIE6 340 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 WDR64B1ANS9 1081 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 TBX3O15119 743 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 BAG4O95429 457 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 PARNO95453 639 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 SFNP31947 248 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 RFC2P35250 354 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 JAK3P52333 1124 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 CCL23P55773 120 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 PPFIA1Q13136 1202 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 AFAP1L1Q8TED9 768 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 PCYT2Q99447 389 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms