RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 CDAN1Q8IWY9 1227 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 NEK11Q8NG66 645 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 CAMKK2Q96RR4 588 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 PNKPQ96T60 521 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 REEP2Q9BRK0 252 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 ARFGAP3Q9NP61 516 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 ZBTB21Q9ULJ3 1066 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 IGLV3-22A0A075B6J6 115 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 EML1O00423 815 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 ATP8B1O43520 1251 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 ZNF76P36508 570 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 BAG6P46379 1132 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 MARSP56192 900 aaKnown RBP20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 CYP4A11Q02928 519 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 SPA17Q15506 151 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 PAPD7Q5XG87 772 aaKnown RBP20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 TRIM59Q8IWR1 403 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 ZC3H3Q8IXZ2 948 aaKnown RBP20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 EHBP1Q8NDI1 1231 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 ZMYND15Q9H091 742 aa20.49■□□□□ 0.87
PRPF40B-208ENST00000548436 CCDC151A5D8V7 595 aa20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 NOL4O94818 638 aa20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 KIF11P52732 1056 aa20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 PDXDC1Q6P996 788 aa20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 ILDR2Q71H61 639 aa20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 TTLL6Q8N841 843 aa20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 NOA1Q8NC60 698 aaKnown RBP20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 GOPCQ9HD26 462 aa20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 ZNF277Q9NRM2 450 aaPredicted RBP20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 RBBP6Q7Z6E9 1792 aaKnown RBP20.48■□□□□ 0.87
PRPF40B-208ENST00000548436 MACROD2A1Z1Q3 448 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 SRGAP2O75044 1071 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 LCA5LO95447 670 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 GNA14O95837 355 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 CFBP00751 764 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 TUBB4BP68371 445 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 GABPB1Q06547 395 aaPredicted RBP20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 KIF5AQ12840 1032 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 BRD3Q15059 726 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 SPDYE2Q495Y8 402 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 CCDC174Q6PII3 467 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 SLC30A10Q6XR72 485 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 LARGE2Q8N3Y3 721 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 EIF2AK1Q9BQI3 630 aaKnown RBP20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 WDR18Q9BV38 432 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 RAB21Q9UL25 225 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 PCDHA13Q9Y5I0 950 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 SAR1BQ9Y6B6 198 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 KIF20AO95235 890 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 RHOXF2BP0C7M4 288 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 ADAM9Q13443 819 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 CACNA2D4Q7Z3S7 1137 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 SFR1Q86XK3 245 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 PSMD1Q99460 953 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 RHOXF2Q9BQY4 288 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 IFIH1Q9BYX4 1025 aaKnown RBP20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 EDEM3Q9BZQ6 932 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 RGL1Q9NZL6 768 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 HDAC9Q9UKV0 1011 aa20.47■□□□□ 0.87
PRPF40B-208ENST00000548436 HOXD13P35453 343 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 EDRF1Q3B7T1 1238 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 RTKN2Q8IZC4 609 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 OGFOD1Q8N543 542 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 POLR3CQ9BUI4 534 aaPredicted RBP20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 FUT8Q9BYC5 575 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 TSGA10Q9BZW7 698 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 TMEM39BQ9GZU3 492 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 BHMT2Q9H2M3 363 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 BCAS3Q9H6U6 928 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 VEZTQ9HBM0 779 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 NLRC4Q9NPP4 1024 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 STK24Q9Y6E0 443 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 RSPH10B2B2RC85 870 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 POTEB2H3BUK9 544 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 RSPH10BP0C881 870 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 ZYXQ15942 572 aaKnown RBP20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 LONRF2Q1L5Z9 754 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 ASTE1Q2TB18 679 aaPredicted RBP20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 HGSNATQ68CP4 663 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 PPP4R3CPQ6ZMV5 832 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 MIGA2Q7L4E1 593 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 EPM2AIP1Q7L775 607 aaPredicted RBP20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 SECISBP2LQ93073 1101 aaKnown RBP20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 RUSC1Q9BVN2 902 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 RANBP17Q9H2T7 1088 aaKnown RBP20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 DEF6Q9H4E7 631 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 POLD4Q9HCU8 107 aa20.46■□□□□ 0.87
PRPF40B-208ENST00000548436 APBA1Q02410 837 aa20.45■□□□□ 0.86
PRPF40B-208ENST00000548436 UTP14CQ5TAP6 766 aaKnown RBP20.45■□□□□ 0.86
PRPF40B-208ENST00000548436 CRACR2AQ9BSW2 395 aa20.45■□□□□ 0.86
PRPF40B-208ENST00000548436 LSM14BQ9BX40 385 aaKnown RBP20.45■□□□□ 0.86
PRPF40B-208ENST00000548436 CEP72Q9P209 647 aa20.45■□□□□ 0.86
PRPF40B-208ENST00000548436 AKR1B10O60218 316 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 MYBP10242 640 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 NR2F2P24468 414 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 KNOP1Q1ED39 458 aaKnown RBP20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 GRIPAP1Q4V328 841 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 OTOP1Q7RTM1 612 aa20.44■□□□□ 0.86
PRPF40B-208ENST00000548436 MMS19Q96T76 1030 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms