RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 GFPT2O94808 682 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 SCNN1DP51172 638 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 SNRPFP62306 86 aaKnown RBP8.46□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC15Q0P6D6 951 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 DYNC1I2Q13409 638 aaKnown RBP8.46□□□□□ -1.05
VPS13D-211ENST00000543710 CES5AQ6NT32 575 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 MIS18BP1Q6P0N0 1132 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 DCUN1D2Q6PH85 259 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 IFNL3Q8IZI9 196 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 METTL13Q8N6R0 699 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC124Q96CT7 223 aaKnown RBP8.46□□□□□ -1.05
VPS13D-211ENST00000543710 TRPV6Q9H1D0 765 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 ZSWIM4Q9H7M6 989 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 KIAA1586Q9HCI6 787 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 TMEM39AQ9NV64 488 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 AATFQ9NY61 560 aaKnown RBP eCLIP8.46□□□□□ -1.05
VPS13D-211ENST00000543710 HOXA2O43364 376 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 CCND2P30279 289 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 GPBP1Q86WP2 473 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 FOXP4Q8IVH2 680 aaPredicted RBP8.46□□□□□ -1.06
VPS13D-211ENST00000543710 VSTM4Q8IW00 320 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 RHOT2Q8IXI1 618 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 SP8Q8IXZ3 490 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 TSPYL6Q8N831 410 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 SLC28A3Q9HAS3 691 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 GGA3Q9NZ52 723 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 PPFIA2O75334 1257 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 TAP1Q03518 808 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 ICA1Q05084 483 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 ME3Q16798 604 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 LRRC8CQ8TDW0 803 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 NACC1Q96RE7 527 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 MMP19Q99542 508 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 BCL2L12Q9HB09 334 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 TAB2Q9NYJ8 693 aa8.46□□□□□ -1.06
VPS13D-211ENST00000543710 SAP30BPQ9UHR5 308 aaKnown RBP8.46□□□□□ -1.06
VPS13D-211ENST00000543710 SRPRBQ9Y5M8 271 aaKnown RBP8.46□□□□□ -1.06
VPS13D-211ENST00000543710 CCDC151A5D8V7 595 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 PTPREP23469 700 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 STX17P56962 302 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 SP3Q02447 781 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 SDCCAG8Q86SQ7 713 aaPredicted RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 FAM160B2Q86V87 743 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 CCDC25Q86WR0 208 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 TEX2Q8IWB9 1127 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 BBS5Q8N3I7 341 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 C3orf20Q8ND61 904 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 AMNQ9BXJ7 453 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 ZHX2Q9Y6X8 837 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 V9GY48 417 aaPredicted RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP42Q9H9J4 1324 aaKnown RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 SMCO2A6NFE2 343 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 MIF4GDA9UHW6 222 aaKnown RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 NAA30Q147X3 362 aaPredicted RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 ARMCX5Q6P1M9 558 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 ARHGEF2Q92974 986 aaKnown RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 P2RX5Q93086 422 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 TRIM62Q9BVG3 475 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 CDHR2Q9BYE9 1310 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 H2AFZP0C0S5 128 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 GMPSP49915 693 aaPredicted RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 VEPH1Q14D04 833 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 POTEAQ6S8J7 498 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 H2AFVQ71UI9 128 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 CEP68Q76N32 757 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 ARHGEF25Q86VW2 580 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 GPC2Q8N158 579 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 FANCBQ8NB91 859 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 CATSPER1Q8NEC5 780 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 GRAMD1AQ96CP6 724 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 FAM89AQ96GI7 184 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 LRGUKQ96M69 825 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 CENPKQ9BS16 269 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 ARMCX3Q9UH62 379 aaPredicted RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 LRRD1A4D1F6 860 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 GOLGA8TH3BQL2 631 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 SMAPO00193 183 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 PGRMC1O00264 195 aaKnown RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 FARP2O94887 1054 aaPredicted RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 GOLGA8HP0CJ92 632 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 PNOCQ13519 176 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 DBN1Q16643 649 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 LRIG3Q6UXM1 1119 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 RASEFQ8IZ41 740 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 DEPTORQ8TB45 409 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 ANKRD36BP1Q96IX9 119 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 SPTLC3Q9NUV7 552 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 ORC6Q9Y5N6 252 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 MYO3AQ8NEV4 1616 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 PRAMEF22A3QJZ6 481 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L15C9J2P7 530 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L13C9JLJ4 530 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L11C9JVI0 530 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L18D6R9N7 530 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L22D6RA61 530 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L17D6RBQ6 530 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L19D6RCP7 530 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L20D6RJB6 530 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 LDHAP00338 332 aaKnown RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 MAPK4P31152 587 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms