RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 HAUS5O94927 633 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 SNX16P57768 344 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 GUCY1A3Q02108 690 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 SP4Q02446 784 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 MORC3Q14149 939 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 WDR44Q5JSH3 913 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 TEDDM1Q5T9Z0 273 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 SV2BQ7L1I2 683 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 RSPH3Q86UC2 560 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 SEC16BQ96JE7 1060 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 MMADHCQ9H3L0 296 aaPredicted RBP14.32□□□□□ -0.12
USP40-208ENST00000450966 AZI2Q9H6S1 392 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 BTBD7Q9P203 1132 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 SLC27A2O14975 620 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 ZBTB7BO15156 539 aaPredicted RBP14.32□□□□□ -0.12
USP40-208ENST00000450966 NPR1P16066 1061 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 ADCY8P40145 1251 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 GOLGA8FQ08AF8 430 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 GOLGA8DPQ0D2H9 430 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 ENOX1Q8TC92 643 aaKnown RBP14.32□□□□□ -0.12
USP40-208ENST00000450966 PPP1R14BQ96C90 147 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 FNBP1Q96RU3 617 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 KCNF1Q9H3M0 494 aa14.32□□□□□ -0.12
USP40-208ENST00000450966 WARS2Q9UGM6 360 aaKnown RBP14.32□□□□□ -0.12
USP40-208ENST00000450966 STK10O94804 968 aaKnown RBP14.31□□□□□ -0.12
USP40-208ENST00000450966 TRIM16O95361 564 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 LSP1P33241 339 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 MDM2Q00987 491 aaPredicted RBP14.31□□□□□ -0.12
USP40-208ENST00000450966 KCNB1Q14721 858 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 NAF1Q96HR8 494 aaKnown RBP14.31□□□□□ -0.12
USP40-208ENST00000450966 POLR3CQ9BUI4 534 aaPredicted RBP14.31□□□□□ -0.12
USP40-208ENST00000450966 OLFML3Q9NRN5 406 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 ARL2BPQ9Y2Y0 163 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 ROBO2Q9HCK4 1378 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 CRCPO75575 148 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 ATF2P15336 505 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 MAGOHP61326 146 aaKnown RBP14.31□□□□□ -0.12
USP40-208ENST00000450966 ADRM1Q16186 407 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 GEN1Q17RS7 908 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 RNF169Q8NCN4 708 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 MAGOHBQ96A72 148 aaKnown RBP14.31□□□□□ -0.12
USP40-208ENST00000450966 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.31□□□□□ -0.12
USP40-208ENST00000450966 ORC6Q9Y5N6 252 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 SOWAHDA6NJG2 315 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 SERPINB2P05120 415 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 SCG2P13521 617 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 HSPA6P17066 643 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 RARS2Q5T160 578 aaKnown RBP14.31□□□□□ -0.12
USP40-208ENST00000450966 TRAF7Q6Q0C0 670 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 TRIM55Q9BYV6 548 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 FAM192AQ9GZU8 254 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 EPB41P11171 864 aaKnown RBP14.31□□□□□ -0.12
USP40-208ENST00000450966 EEF1GP26641 437 aaKnown RBP14.31□□□□□ -0.12
USP40-208ENST00000450966 IQCB1Q15051 598 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 WDR60Q8WVS4 1066 aa14.31□□□□□ -0.12
USP40-208ENST00000450966 CCT8L1PA6NM43 557 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 CLEC4GQ6UXB4 293 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 TMC5Q6UXY8 1006 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 RGS9BPQ6ZS82 235 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.3□□□□□ -0.12
USP40-208ENST00000450966 GDAP1Q8TB36 358 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 CYFIP2Q96F07 1278 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 USP40Q9NVE5 1235 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 TNS3Q68CZ2 1445 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 SLC1A4P43007 532 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 VSNL1P62760 191 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 SPARCL1Q14515 664 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 MFSD14BQ5SR56 506 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 CCDC125Q86Z20 511 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 VWA3AA6NCI4 1184 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 OSBPP22059 807 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 MMEL1Q495T6 779 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 AKNAD1Q5T1N1 836 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 USPL1Q5W0Q7 1092 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 DDI1Q8WTU0 396 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.3□□□□□ -0.12
USP40-208ENST00000450966 EHHADHQ08426 723 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 MAK16Q9BXY0 300 aaKnown RBP14.3□□□□□ -0.12
USP40-208ENST00000450966 NEURL1BA8MQ27 555 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 CAPN1P07384 714 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 S100A1P23297 94 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 MMP14P50281 582 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 ARPC4P59998 168 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 ARID5BQ14865 1188 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 ZCWPW2Q504Y3 356 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 HPCAL4Q9UM19 191 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 CAPN11Q9UMQ6 739 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.3□□□□□ -0.12
USP40-208ENST00000450966 BZW2Q9Y6E2 419 aaKnown RBP14.3□□□□□ -0.12
USP40-208ENST00000450966 ERBB3P21860 1342 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 IGSF1Q8N6C5 1336 aa14.3□□□□□ -0.12
USP40-208ENST00000450966 COPB1P53618 953 aaKnown RBP14.29□□□□□ -0.12
USP40-208ENST00000450966 ASPHQ12797 758 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 TMEM259Q4ZIN3 620 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 GORASP1Q9BQQ3 440 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 DEXIO95424 95 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 TCP11X2Q5H9J9 407 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 NAA35Q5VZE5 725 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 CHST3Q7LGC8 479 aa14.29□□□□□ -0.12
USP40-208ENST00000450966 UPF3AQ9H1J1 476 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms