RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 KRT71Q3SY84 523 aa10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 HIBCHQ6NVY1 386 aaPredicted RBP10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 CAVIN3Q969G5 261 aa10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 RABGEF1Q9UJ41 708 aa10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 EVA1CP58658 441 aa10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 MAGOHP61326 146 aaKnown RBP10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 PRPF4BQ13523 1007 aaKnown RBP10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 PFKFB3Q16875 520 aaPredicted RBP10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 C4orf32Q8N8J7 132 aa10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 KIAA0895Q8NCT3 520 aa10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 MAGOHBQ96A72 148 aaKnown RBP10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 CCDC113Q9H0I3 377 aa10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 TPX2Q9ULW0 747 aaKnown RBP10.85□□□□□ -0.67
PTCHD4-202ENST00000398738 TRAF5O00463 557 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 HSD17B3P37058 310 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 SMTNP53814 917 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 ITGB3BPQ13352 177 aaPredicted RBP10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 FAM133AQ8N9E0 248 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 GJA10Q969M2 543 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 THOC1Q96FV9 657 aaKnown RBP10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 CDK5RAP3Q96JB5 506 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 PPP1R12CQ9BZL4 782 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 LRRC4CQ9HCJ2 640 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 EZRP15311 586 aaKnown RBP10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 ATF3P18847 181 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 FGFR2P21802 821 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 IGHMBP2P38935 993 aaKnown RBP10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 ERVK-9P63128 1117 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 CACNA2D3Q8IZS8 1091 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 FUKQ8N0W3 1084 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 ZNF512BQ96KM6 892 aaPredicted RBP10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 SELENOSQ9BQE4 189 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 LSM14BQ9BX40 385 aaKnown RBP10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 KBTBD4Q9NVX7 518 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 CNOT8Q9UFF9 292 aaKnown RBP10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 FBXL5Q9UKA1 691 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 LEMD3Q9Y2U8 911 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 USP17L3A6NCW0 530 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 USP17L4A6NCW7 530 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 CALM1P0DP23 149 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 CALM2P0DP24 149 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 CALM3P0DP25 149 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 TFAP4Q01664 338 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 TRIM28Q13263 835 aaKnown RBP10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 USP17L1Q7RTZ2 530 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 PIGBQ92521 554 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 DYNLL2Q96FJ2 89 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 SEC16BQ96JE7 1060 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 ERGIC2Q96RQ1 377 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 PLA2G12BQ9BX93 195 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 CELF4Q9BZC1 486 aaKnown RBP10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 AMACRQ9UHK6 382 aa10.84□□□□□ -0.67
PTCHD4-202ENST00000398738 PCDH11XQ9BZA7 1347 aa10.83□□□□□ -0.67
PTCHD4-202ENST00000398738 PCDH11YQ9BZA8 1340 aa10.83□□□□□ -0.67
PTCHD4-202ENST00000398738 A0A087X0T9 212 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 DAPK3O43293 454 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 FBXO45P0C2W1 286 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 FAM228BP0C875 321 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 CALML3P27482 149 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 COPB2P35606 906 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 PEX19P40855 299 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 IFNAR2P48551 515 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 CHRNDQ07001 517 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 KCNB1Q14721 858 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 SLC9C1Q4G0N8 1177 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 FAM133BQ5BKY9 247 aaKnown RBP10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 ARL6IP4Q66PJ3 421 aaKnown RBP10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 MSL1Q68DK7 614 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 NEUROG2Q9H2A3 272 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 GDF3Q9NR23 364 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 MCM9Q9NXL9 1143 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 PCDHA4Q9UN74 947 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 PHLPP1O60346 1717 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 MROH5Q6ZUA9 1318 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 MYH13Q9UKX3 1938 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 HMGB1P1B2RPK0 211 aaPredicted RBP10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 ERVV-2B6SEH9 535 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 EPS15P42566 896 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 TRAPPC10P48553 1259 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 PPP2R5BQ15173 497 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 ACCSLQ4AC99 568 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 SFMBT2Q5VUG0 894 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 TBC1D1Q86TI0 1168 aaPredicted RBP10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 RAPGEF5Q92565 580 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 TACO1Q9BSH4 297 aaKnown RBP10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 BIN2Q9UBW5 565 aaPredicted RBP10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 SIK3Q9Y2K2 1263 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 ATP8A1Q9Y2Q0 1164 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 L3MBTL1Q9Y468 752 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 ARFGEF2Q9Y6D5 1785 aa10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 COL22A1Q8NFW1 1626 aaPredicted RBP10.83□□□□□ -0.68
PTCHD4-202ENST00000398738 RASSF9O75901 435 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 ITGA4P13612 1032 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 NAPAP54920 295 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 TNNC1P63316 161 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 KLHL30Q0D2K2 578 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 RPS6KA1Q15418 735 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 NBPF9Q3BBW0 867 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 TAX1BP1Q86VP1 789 aa10.82□□□□□ -0.68
PTCHD4-202ENST00000398738 FAM228AQ86W67 206 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms