RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PSMA7O14818 248 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 TUBB4AP04350 444 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 SSBP05455 408 aaKnown RBP eCLIP20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 SKILP12757 684 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 SFNP31947 248 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 JAK3P52333 1124 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 PDE4DQ08499 809 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 STXBP2Q15833 593 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 MIER3Q7Z3K6 550 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 GIMAP8Q8ND71 665 aaPredicted RBP20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 RDM1Q8NG50 284 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 UIMC1Q96RL1 719 aa20.27■□□□□ 0.83
CCDC88C-203ENST00000389856 LOC102724159A0A0B4J2E5 919 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 CHMP2AO43633 222 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 KLRC4O43908 158 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 KRT18P05783 430 aaKnown RBP20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 KCTD2Q14681 263 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 PWP2Q15269 919 aaKnown RBP20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 TPD52L1Q16890 204 aaPredicted RBP20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 SPATA1Q5VX52 437 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 SPRYD7Q5W111 196 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 FILIP1Q7Z7B0 1213 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 CCDC65Q8IXS2 484 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 INPP4AQ96PE3 977 aaPredicted RBP20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 NACC1Q96RE7 527 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 HSD17B14Q9BPX1 270 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 UNC45AQ9H3U1 944 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 RWDD2AQ9UIY3 292 aa20.26■□□□□ 0.83
CCDC88C-203ENST00000389856 POTEFA5A3E0 1075 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 MYMKA6NI61 221 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 EIF3JO75822 258 aaKnown RBP20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 CNMDO75829 334 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 EYA4O95677 639 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 SPATA31C1P0DKV0 1188 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 ERCC3P19447 782 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 CCZ1BP86790 482 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 CCZ1P86791 482 aaPredicted RBP20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 PAK1Q13153 545 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 COBLL1Q53SF7 1204 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 POTEGQ6S5H5 508 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 POTEEQ6S8J3 1075 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 CCDC112Q8NEF3 446 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 ZNF526Q8TF50 670 aaPredicted RBP20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 LRRC15Q8TF66 581 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 DDX12PQ92771 950 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 DHTKD1Q96HY7 919 aaPredicted RBP20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 PARK7Q99497 189 aaKnown RBP20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 RBPJLQ9UBG7 517 aa20.25■□□□□ 0.83
CCDC88C-203ENST00000389856 PPP1R3GB7ZBB8 358 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 PDHXO00330 501 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 CCP110O43303 1012 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 KIF20AO95235 890 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 FMR1Q06787 632 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 ECM1Q16610 540 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 B3GNT9Q6UX72 402 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 GPBP1Q86WP2 473 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 SYT2Q8N9I0 419 aaPredicted RBP20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 GPRC5AQ8NFJ5 357 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 MS4A4AQ96JQ5 239 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 BICDL2A1A5D9 508 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 WDR64B1ANS9 1081 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 E9PMD0 336 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 EML1O00423 815 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 DKC1O60832 514 aaKnown RBP eCLIP20.24■□□□□ 0.835e-9■■■■■ 40.8
CCDC88C-203ENST00000389856 P4HBP07237 508 aaKnown RBP20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 SFPQP23246 707 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 HUNKP57058 714 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 ERVK-9P63128 1117 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 ERVK-24P63145 666 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 CYP4A11Q02928 519 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 KLHL10Q6JEL2 608 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 ZNF746Q6NUN9 644 aaPredicted RBP20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 KCNK18Q7Z418 384 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 TPH2Q8IWU9 490 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 ANKRD20A12PQ8NF67 263 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 MMP19Q99542 508 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 HSD3B7Q9H2F3 369 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 KCND2Q9NZV8 630 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 NFE2L3Q9Y4A8 694 aa20.24■□□□□ 0.83
CCDC88C-203ENST00000389856 NFASCO94856 1347 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 ITGBL1O95965 494 aaPredicted RBP20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 FCER1AP12319 257 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 IDEP14735 1019 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 CDK11BP21127 795 aaKnown RBP20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 ALDH5A1P51649 535 aaPredicted RBP20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 UBASH3AP57075 661 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 HSP90AA2PQ14568 343 aaPredicted RBP20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 TMC6Q7Z403 805 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 SMAP1Q8IYB5 467 aaPredicted RBP20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 ADSSL1Q8N142 457 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 DYDC2Q96IM9 177 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 ZSWIM4Q9H7M6 989 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 CTNND2Q9UQB3 1225 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 SAMM50Q9Y512 469 aa20.23■□□□□ 0.83
CCDC88C-203ENST00000389856 DHX15O43143 795 aaKnown RBP20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 SLITRK3O94933 977 aa20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 SERPINC1P01008 464 aa20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 SLC12A3P55017 1021 aa20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 SPAG1Q07617 926 aa20.22■□□□□ 0.83
CCDC88C-203ENST00000389856 DYMQ7RTS9 669 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms