RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FOXR1Q6PIV2 292 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 PRELID1Q9Y255 219 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 LINC00854A0A1B0GVQ3 168 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 LSM1O15116 133 aaKnown RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 E2F6O75461 281 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 VIMP08670 466 aaKnown RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 RPL13P26373 211 aaKnown RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 CFAP221Q4G0U5 840 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 TBCKQ8TEA7 893 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 POLR3CQ9BUI4 534 aaPredicted RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 NT5C3AQ9H0P0 336 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 MRPL44Q9H9J2 332 aaKnown RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 LIMA1Q9UHB6 759 aaKnown RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 TSKSQ9UJT2 592 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 TRIM49BA6NDI0 452 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 TPPPO94811 219 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 RPSAP08865 295 aaKnown RBP11.4□□□□□ -0.58
LIG1-220ENST00000601091 SCNN1BP51168 640 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 TROAPQ12815 778 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 RCN1Q15293 331 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 RAD9BQ6WBX8 426 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 RASGRP2Q7LDG7 609 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 IFT20Q8IY31 132 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 ATP11CQ8NB49 1132 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 ZMAT2Q96NC0 199 aaKnown RBP11.4□□□□□ -0.58
LIG1-220ENST00000601091 PCDHA12Q9UN75 941 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 FAN1Q9Y2M0 1017 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 IKBKGQ9Y6K9 419 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 LTN1O94822 1766 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 FAM237AA0A1B0GTK4 181 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 TTC26A0AVF1 554 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 CAMTA2O94983 1202 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 FXR1P51114 621 aaKnown RBP eCLIP11.4□□□□□ -0.58
LIG1-220ENST00000601091 ADCY1Q08828 1119 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 DIXDC1Q155Q3 683 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 NCAPH2Q6IBW4 605 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 NELFCDQ8IXH7 590 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 SPDYE1Q8NFV5 336 aaPredicted RBP11.4□□□□□ -0.58
LIG1-220ENST00000601091 GOLGA5Q8TBA6 731 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 USP33Q8TEY7 942 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 EZH1Q92800 747 aaPredicted RBP11.4□□□□□ -0.58
LIG1-220ENST00000601091 NSUN4Q96CB9 384 aaKnown RBP11.4□□□□□ -0.58
LIG1-220ENST00000601091 NHEJ1Q9H9Q4 299 aaPredicted RBP11.4□□□□□ -0.58
LIG1-220ENST00000601091 POLD4Q9HCU8 107 aa11.4□□□□□ -0.58
LIG1-220ENST00000601091 GBP2P32456 591 aaPredicted RBP11.4□□□□□ -0.59
LIG1-220ENST00000601091 DCCP43146 1447 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 KLHL30Q0D2K2 578 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 CASP8Q14790 479 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 TNIP1Q15025 636 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 HAUS3Q68CZ6 603 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 USP17L2Q6R6M4 530 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 C14orf80Q86SX3 495 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 SYCP3Q8IZU3 236 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 VGLL2Q8N8G2 317 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 LARP4BQ92615 738 aaKnown RBP11.4□□□□□ -0.59
LIG1-220ENST00000601091 TCHPQ9BT92 498 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 CAPS2Q9BXY5 557 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 HYOU1Q9Y4L1 999 aa11.4□□□□□ -0.59
LIG1-220ENST00000601091 CYP27A1Q02318 531 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 EHMT1Q9H9B1 1298 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 LMTK3Q96Q04 1460 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 FRMPD2Q68DX3 1309 aaPredicted RBP11.39□□□□□ -0.59
LIG1-220ENST00000601091 BOLA2-SMG1P6H3BVE0 249 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 TOM1O60784 492 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 GNA14O95837 355 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 ZNF18P17022 549 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 PPFIA1Q13136 1202 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 SF3B3Q15393 1217 aaKnown RBP11.39□□□□□ -0.59
LIG1-220ENST00000601091 KCNV1Q6PIU1 500 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 CEP57Q86XR8 500 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 TBC1D5Q92609 795 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 SPDL1Q96EA4 605 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 MPHOSPH6Q99547 160 aaKnown RBP11.39□□□□□ -0.59
LIG1-220ENST00000601091 XDHP47989 1333 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 ITIH6Q6UXX5 1313 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 B3GALNT1O75752 331 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 TBC1D8O95759 1140 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 ATP2B4P23634 1241 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 TUFMP49411 452 aaKnown RBP11.39□□□□□ -0.59
LIG1-220ENST00000601091 ASIC2Q16515 512 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 DCAF17Q5H9S7 520 aaPredicted RBP11.39□□□□□ -0.59
LIG1-220ENST00000601091 RNF187Q5TA31 235 aaPredicted RBP11.39□□□□□ -0.59
LIG1-220ENST00000601091 ANKRD13CQ8N6S4 541 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 ZC3H15Q8WU90 426 aaKnown RBP11.39□□□□□ -0.59
LIG1-220ENST00000601091 STK17AQ9UEE5 414 aa11.39□□□□□ -0.59
LIG1-220ENST00000601091 ZEB2O60315 1214 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 NTSR2O95665 410 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 SARSP49591 514 aaKnown RBP11.38□□□□□ -0.59
LIG1-220ENST00000601091 RNASE9P60153 205 aaKnown RBP11.38□□□□□ -0.59
LIG1-220ENST00000601091 SEC23AQ15436 765 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 MAN2A1Q16706 1144 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 HS2ST1Q7LGA3 356 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 TMEM47Q9BQJ4 181 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 C6orf203Q9P0P8 240 aaPredicted RBP11.38□□□□□ -0.59
LIG1-220ENST00000601091 A6NNZ2 444 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 PPP1R3GB7ZBB8 358 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 ACTN2P35609 894 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 SLC1A4P43007 532 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 ZNF131P52739 623 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 TUBB8Q3ZCM7 444 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 172.6 ms