RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ARHGAP44Q17R89 818 aa6.48□□□□□ -1.37
LINC00560-201ENST00000564593 PIP4K2CQ8TBX8 421 aa6.48□□□□□ -1.37
LINC00560-201ENST00000564593 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.48□□□□□ -1.37
LINC00560-201ENST00000564593 STAG1Q8WVM7 1258 aa6.48□□□□□ -1.37
LINC00560-201ENST00000564593 NEMP1O14524 444 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 ZEB2O60315 1214 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 AMY2AP04746 511 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 PNLIPP16233 465 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 BPIP17213 487 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 AMY2BP19961 511 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 STAT4Q14765 748 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 EP400NLQ6ZTU2 488 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 FERMT3Q86UX7 667 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 SMC1BQ8NDV3 1235 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 GPR101Q96P66 508 aaPredicted RBP6.47□□□□□ -1.37
LINC00560-201ENST00000564593 SMURF1Q9HCE7 757 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 SLC6A20Q9NP91 592 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 CRTAC1Q9NQ79 661 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 THG1LQ9NWX6 298 aaKnown RBP6.47□□□□□ -1.37
LINC00560-201ENST00000564593 DSEQ9UL01 958 aa6.47□□□□□ -1.37
LINC00560-201ENST00000564593 TCRBV5S4A2TA0A5A2 114 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 SLC12A8A0AV02 714 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 GLI4P10075 376 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 ATP2A2P16615 1042 aaKnown RBP6.46□□□□□ -1.38
LINC00560-201ENST00000564593 PMLP29590 882 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 ID4P47928 161 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 GUCY2FP51841 1108 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 CHRNA2Q15822 529 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 HABP4Q5JVS0 413 aaKnown RBP6.46□□□□□ -1.38
LINC00560-201ENST00000564593 RNF219Q5W0B1 726 aaPredicted RBP6.46□□□□□ -1.38
LINC00560-201ENST00000564593 STEAP3Q658P3 488 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 LHFPL2Q6ZUX7 228 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 PTRH1Q86Y79 214 aaKnown RBP6.46□□□□□ -1.38
LINC00560-201ENST00000564593 ABHD4Q8TB40 342 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 CHTF18Q8WVB6 975 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 SHISA4Q96DD7 197 aa6.46□□□□□ -1.38
LINC00560-201ENST00000564593 TYW1Q9NV66 732 aaKnown RBP6.46□□□□□ -1.38
LINC00560-201ENST00000564593 KCNK3O14649 394 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 HGSO14964 777 aaPredicted RBP6.45□□□□□ -1.38
LINC00560-201ENST00000564593 GPR39O43194 453 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 MAFKO60675 156 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 KRT37O76014 449 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 FKBP9O95302 570 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 PDGFRBP09619 1106 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 ADCYAP1R1P41586 468 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 AFMP43652 599 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 TMPRSS15P98073 1019 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 FKBP9P1Q75LS8 142 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 OTOP1Q7RTM1 612 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 BOCQ9BWV1 1114 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 APOBEC2Q9Y235 224 aaKnown RBP6.45□□□□□ -1.38
LINC00560-201ENST00000564593 PHLDB1Q86UU1 1377 aa6.45□□□□□ -1.38
LINC00560-201ENST00000564593 SLC6A11P48066 632 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 KPNA1P52294 538 aaPredicted RBP6.44□□□□□ -1.38
LINC00560-201ENST00000564593 OCRLQ01968 901 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 FBLN7Q53RD9 439 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 HHIPL2Q6UWX4 724 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 C11orf74Q86VG3 221 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 DCP2Q8IU60 420 aaKnown RBP6.44□□□□□ -1.38
LINC00560-201ENST00000564593 NETO2Q8NC67 525 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 RNF32Q9H0A6 362 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 AP5M1Q9H0R1 490 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 RXFP1Q9HBX9 757 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 SLC5A4Q9NY91 659 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 SIT1Q9Y3P8 196 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 NUB1Q9Y5A7 615 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 H7C1D1 291 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 MAN2B1O00754 1011 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 DBHP09172 617 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 LSSP48449 732 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 IRF9Q00978 393 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 PLEKHG6Q3KR16 790 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 ATP13A4Q4VNC1 1196 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 BRDTQ58F21 947 aaPredicted RBP6.44□□□□□ -1.38
LINC00560-201ENST00000564593 EMC4Q5J8M3 183 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 NECAB2Q7Z6G3 386 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 SPATS2Q86XZ4 545 aaKnown RBP6.44□□□□□ -1.38
LINC00560-201ENST00000564593 NLGN4XQ8N0W4 816 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 UHMK1Q8TAS1 419 aaKnown RBP6.44□□□□□ -1.38
LINC00560-201ENST00000564593 SH3RF2Q8TEC5 729 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 SEC14L1Q92503 715 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 CEP89Q96ST8 783 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 KRTAP4-5Q9BYR2 181 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 CD244Q9BZW8 370 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 SMOC1Q9H4F8 434 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 TNFRSF12AQ9NP84 129 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 SPTLC3Q9NUV7 552 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 OXSMQ9NWU1 459 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 NUDT5Q9UKK9 219 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 SRPK3Q9UPE1 567 aa6.44□□□□□ -1.38
LINC00560-201ENST00000564593 YBX2Q9Y2T7 364 aaKnown RBP6.44□□□□□ -1.38
LINC00560-201ENST00000564593 ZC3H12DA2A288 527 aaKnown RBP6.43□□□□□ -1.38
LINC00560-201ENST00000564593 SLC27A2O14975 620 aa6.43□□□□□ -1.38
LINC00560-201ENST00000564593 SRGAP3O43295 1099 aa6.43□□□□□ -1.38
LINC00560-201ENST00000564593 TADA3O75528 432 aa6.43□□□□□ -1.38
LINC00560-201ENST00000564593 CYBBP04839 570 aa6.43□□□□□ -1.38
LINC00560-201ENST00000564593 ZBTB48P10074 688 aaPredicted RBP6.43□□□□□ -1.38
LINC00560-201ENST00000564593 SDHBP21912 280 aa6.43□□□□□ -1.38
LINC00560-201ENST00000564593 EXOSC10Q01780 885 aaKnown RBP6.43□□□□□ -1.38
LINC00560-201ENST00000564593 ZNF174Q15697 407 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms