RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ADD3Q9UEY8 706 aaKnown RBP18.77■□□□□ 0.6
LDLR-206ENST00000557958 PHIPQ8WWQ0 1821 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 ZNF536O15090 1300 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 IGLV3-22A0A075B6J6 115 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 LRRC10BA6NIK2 292 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 KCNJ18B7U540 433 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 IDEP14735 1019 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 FKBP1BP68106 108 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 GHRHRQ02643 423 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 KCNJ12Q14500 433 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 ARID5BQ14865 1188 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 CEP55Q53EZ4 464 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 TCP11X2Q5H9J9 407 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 P2RX5Q93086 422 aa18.77■□□□□ 0.6
LDLR-206ENST00000557958 TPM1P09493 284 aa18.76■□□□□ 0.59
LDLR-206ENST00000557958 IRX3P78415 501 aaPredicted RBP18.76■□□□□ 0.59
LDLR-206ENST00000557958 DYMQ7RTS9 669 aa18.76■□□□□ 0.59
LDLR-206ENST00000557958 C17orf53Q8N3J3 647 aaPredicted RBP18.76■□□□□ 0.59
LDLR-206ENST00000557958 DNM3Q9UQ16 869 aa18.76■□□□□ 0.59
LDLR-206ENST00000557958 POTEB3A0JP26 581 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 N4BP3O15049 544 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 SSBP05455 408 aaKnown RBP eCLIP18.75■□□□□ 0.59
LDLR-206ENST00000557958 PLA2G4BP0C869 781 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 STAT3P40763 770 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 HUNKP57058 714 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 STK4Q13043 487 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 SNAPC2Q13487 334 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 KRT31Q15323 416 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 POTEBQ6S5H4 581 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 APTXQ7Z2E3 356 aaKnown RBP18.75■□□□□ 0.59
LDLR-206ENST00000557958 KCNK18Q7Z418 384 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 CCDC65Q8IXS2 484 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 PROCA1Q8NCQ7 364 aaPredicted RBP18.75■□□□□ 0.59
LDLR-206ENST00000557958 POLR3CQ9BUI4 534 aaPredicted RBP18.75■□□□□ 0.59
LDLR-206ENST00000557958 WDR11Q9BZH6 1224 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 KCNH4Q9UQ05 1017 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 CCP110O43303 1012 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 PEX10O60683 326 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 KIF20AO95235 890 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 FGFR1OPO95684 399 aaKnown RBP18.75■□□□□ 0.59
LDLR-206ENST00000557958 ECM1Q16610 540 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 LRCH2Q5VUJ6 765 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 TTI2Q6NXR4 508 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 FASTKD5Q7L8L6 764 aaKnown RBP18.75■□□□□ 0.59
LDLR-206ENST00000557958 GUF1Q8N442 669 aaKnown RBP18.75■□□□□ 0.59
LDLR-206ENST00000557958 CSGALNACT2Q8N6G5 542 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 VAV3Q9UKW4 847 aa18.75■□□□□ 0.59
LDLR-206ENST00000557958 SPDYE16A6NNV3 312 aaPredicted RBP18.74■□□□□ 0.59
LDLR-206ENST00000557958 MED24O75448 989 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 KRT18P05783 430 aaKnown RBP18.74■□□□□ 0.59
LDLR-206ENST00000557958 FCER1AP12319 257 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 TBX2Q13207 712 aaPredicted RBP18.74■□□□□ 0.59
LDLR-206ENST00000557958 PPP2R5CQ13362 524 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 PPFIBP1Q86W92 1011 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 GPBP1Q86WP2 473 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 CATSPER3Q86XQ3 398 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 SLC5A5Q92911 643 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 TRERF1Q96PN7 1200 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 KCND1Q9NSA2 647 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 ITIH6Q6UXX5 1313 aa18.74■□□□□ 0.59
LDLR-206ENST00000557958 GAS7O60861 476 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 MUTP22033 750 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 COPB1P53618 953 aaKnown RBP18.73■□□□□ 0.59
LDLR-206ENST00000557958 OAZ1P54368 228 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 TRIM14Q14142 442 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 TMEM132BQ14DG7 1078 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 GLIPR1L2Q4G1C9 344 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 MUM1L1Q5H9M0 696 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 SNRNP48Q6IEG0 339 aaKnown RBP18.73■□□□□ 0.59
LDLR-206ENST00000557958 FOXR2Q6PJQ5 311 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 NIPA1Q7RTP0 329 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 CYP2W1Q8TAV3 490 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 CLEC4DQ8WXI8 215 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 SRRTQ9BXP5 876 aaKnown RBP18.73■□□□□ 0.59
LDLR-206ENST00000557958 TUFT1Q9NNX1 390 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 SLC39A2Q9NP94 309 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 PANK4Q9NVE7 773 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 AGTPBP1Q9UPW5 1226 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.73■□□□□ 0.591e-13■□□□□ 8.8
LDLR-206ENST00000557958 RPTORQ8N122 1335 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 TRIM49BA6NDI0 452 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 E9PMD0 336 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 MEIS1O00470 390 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 NFIBO00712 420 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 BCRP11274 1271 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 LRRC63Q05C16 580 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 KIAA0895Q8NCT3 520 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 UIMC1Q96RL1 719 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 TSG101Q99816 390 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 ZNF577Q9BSK1 485 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 PAGR1Q9BTK6 254 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 PAPPA2Q9BXP8 1791 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 RIPK3Q9Y572 518 aa18.73■□□□□ 0.59
LDLR-206ENST00000557958 POTEFA5A3E0 1075 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 UNCXA6NJT0 531 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 PSMD10O75832 226 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 EHHADHQ08426 723 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 COASYQ13057 564 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 POTEGQ6S5H5 508 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 POTEEQ6S8J3 1075 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms