RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 NLRX1Q86UT6 975 aa13.96□□□□□ -0.17
PTPRF-213ENST00000481019 CCDC148Q8NFR7 591 aa13.96□□□□□ -0.17
PTPRF-213ENST00000481019 CCDC12Q8WUD4 166 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-213ENST00000481019 GDF15Q99988 308 aa13.96□□□□□ -0.17
PTPRF-213ENST00000481019 PHF20Q9BVI0 1012 aa13.96□□□□□ -0.17
PTPRF-213ENST00000481019 GLT8D2Q9H1C3 349 aa13.96□□□□□ -0.17
PTPRF-213ENST00000481019 PCDHA4Q9UN74 947 aa13.96□□□□□ -0.17
PTPRF-213ENST00000481019 TRIOBPQ9H2D6 2365 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 MEIS1O00470 390 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 B4GALT4O60513 344 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 CDKL5O76039 1030 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 CYP3A4P08684 503 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 CLTBP09497 229 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 GNA11P29992 359 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 CHMP4BP1P59074 171 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 MTMR1Q13613 665 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 HIC1Q14526 733 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 CEP55Q53EZ4 464 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 EARS2Q5JPH6 523 aaKnown RBP13.95□□□□□ -0.18
PTPRF-213ENST00000481019 METTL7BQ6UX53 244 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 TEX2Q8IWB9 1127 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 BLIDQ8IZY5 108 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 DAGLBQ8NCG7 672 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 CTAGE1Q96RT6 745 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 GPR20Q99678 358 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 ALG1Q9BT22 464 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 MLXIPQ9HAP2 919 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 KCNH7Q9NS40 1196 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 TRMT13Q9NUP7 481 aaKnown RBP13.95□□□□□ -0.18
PTPRF-213ENST00000481019 TBX21Q9UL17 535 aa13.95□□□□□ -0.18
PTPRF-213ENST00000481019 UMODL1Q5DID0 1318 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 FAM205CA6NFA0 338 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 KIAA0355O15063 1070 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 PSEN2P49810 448 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 DGKDQ16760 1214 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 TRIM50Q86XT4 487 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 BADQ92934 168 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 LENG9Q96B70 501 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 TOX2Q96NM4 488 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 SENP7Q9BQF6 1050 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 C16orf70Q9BSU1 422 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 EHMT1Q9H9B1 1298 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 AGO4Q9HCK5 861 aaKnown RBP13.94□□□□□ -0.18
PTPRF-213ENST00000481019 TMEM39AQ9NV64 488 aa13.94□□□□□ -0.18
PTPRF-213ENST00000481019 SZT2Q5T011 3432 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 GSTTP1A0A1W2PQM5 241 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 DCDC2CA8MYV0 355 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 HAS3O00219 553 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 KPNA6O60684 536 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 F2P00734 622 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 LGALS2P05162 132 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 HSP90AA1P07900 732 aaKnown RBP13.93□□□□□ -0.18
PTPRF-213ENST00000481019 CYP2C9P11712 490 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 EPHB4P54760 987 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 ZNF200P98182 395 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-213ENST00000481019 NEDD9Q14511 834 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 MFSD10Q14728 455 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 BRDTQ58F21 947 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-213ENST00000481019 GDF6Q6KF10 455 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-213ENST00000481019 PLA2G4DQ86XP0 818 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 BICD2Q8TD16 824 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 TBCKQ8TEA7 893 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 GJA10Q969M2 543 aa13.93□□□□□ -0.18
PTPRF-213ENST00000481019 ZSCAN31Q96LW9 406 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-213ENST00000481019 K7ELQ4 463 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-213ENST00000481019 DHX15O43143 795 aaKnown RBP13.92□□□□□ -0.18
PTPRF-213ENST00000481019 PPFIA4O75335 1185 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 CCNE2O96020 404 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 ZNF76P36508 570 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 GUCY1B3Q02153 619 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 NR5A1Q13285 461 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 KIAA0753Q2KHM9 967 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 FAM47CQ5HY64 1035 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 UTP14CQ5TAP6 766 aaKnown RBP13.92□□□□□ -0.18
PTPRF-213ENST00000481019 TNFRSF25Q93038 417 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 PCYT2Q99447 389 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 PPP1R12CQ9BZL4 782 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 HDAC6Q9UBN7 1215 aa13.92□□□□□ -0.18
PTPRF-213ENST00000481019 DDX39AO00148 427 aaKnown RBP13.91□□□□□ -0.18
PTPRF-213ENST00000481019 TDP2O95551 362 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 CIITAP33076 1130 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 CYP2C18P33260 490 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 INF2Q27J81 1249 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 PRR16Q569H4 304 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 NFRKBQ6P4R8 1299 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 NIPA1Q7RTP0 329 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 DHX38Q92620 1227 aaKnown RBP13.91□□□□□ -0.18
PTPRF-213ENST00000481019 WNT8BQ93098 351 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 VWCEQ96DN2 955 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 TMX3Q96JJ7 454 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 CDHR1Q96JP9 859 aa13.91□□□□□ -0.18
PTPRF-213ENST00000481019 MROH7Q68CQ1 1323 aa13.9□□□□□ -0.18
PTPRF-213ENST00000481019 NOP56O00567 594 aaKnown RBP13.9□□□□□ -0.18
PTPRF-213ENST00000481019 WNT7AO00755 349 aa13.9□□□□□ -0.18
PTPRF-213ENST00000481019 TCF7P36402 384 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-213ENST00000481019 KRT40Q6A162 431 aa13.9□□□□□ -0.18
PTPRF-213ENST00000481019 MCTP2Q6DN12 878 aa13.9□□□□□ -0.18
PTPRF-213ENST00000481019 GALNT17Q6IS24 598 aa13.9□□□□□ -0.18
PTPRF-213ENST00000481019 NOC4LQ9BVI4 516 aaKnown RBP13.9□□□□□ -0.18
PTPRF-213ENST00000481019 WNT8AQ9H1J5 351 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms