RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 TTC6Q86TZ1 520 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 METTL16Q86W50 562 aaKnown RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 HSCBQ8IWL3 235 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 TMTC2Q8N394 836 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 MIGA1Q8NAN2 632 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 STK35Q8TDR2 534 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 INTS4Q96HW7 963 aaKnown RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 FAM46AQ96IP4 442 aaKnown RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 TMEM87BQ96K49 555 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 JAKMIP1Q96N16 626 aaKnown RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 BCO2Q9BYV7 579 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 OSBPL7Q9BZF2 842 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 DHX36Q9H2U1 1008 aaKnown RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 PDRG1Q9NUG6 133 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 LIMCH1Q9UPQ0 1083 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 SCN9AQ15858 1988 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 ZNF646O15015 1829 aaPredicted RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 TMEM238LA0A1B0GVL6 79 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 WDHD1O75717 1129 aaPredicted RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 P4HBP07237 508 aaKnown RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 H2AFB1P0C5Y9 115 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 H2AFB2P0C5Z0 115 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 CASTP20810 708 aaKnown RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 MCM5P33992 734 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 MAPK8P45983 427 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 TDO2P48775 406 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 PRELPP51888 382 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 FMR1Q06787 632 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS41-211ENST00000466017 PPARAQ07869 468 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 CCDC178Q5BJE1 867 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 CDC42EP5Q6NZY7 148 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 MFSD6Q6ZSS7 791 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 ARHGAP27Q6ZUM4 889 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 FOXP4Q8IVH2 680 aaPredicted RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 AMOTL1Q8IY63 956 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 MB21D2Q8IYB1 491 aaPredicted RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 TEX11Q8IYF3 940 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 RGS22Q8NE09 1264 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 SH3RF3Q8TEJ3 882 aaPredicted RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 TGFBRAP1Q8WUH2 860 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 SDR42E1Q8WUS8 393 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 ANKS1AQ92625 1134 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 WNT8BQ93098 351 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 ZNF274Q96GC6 653 aaPredicted RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 ASB16Q96NS5 453 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 TMPRSS13Q9BYE2 586 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 CLEC4MQ9H2X3 399 aaPredicted RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 ZNF287Q9HBT7 754 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 CWC22Q9HCG8 908 aaKnown RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 TCP11L1Q9NUJ3 509 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 USP40Q9NVE5 1235 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 ZSWIM5Q9P217 1185 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 JAG2Q9Y219 1238 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS41-211ENST00000466017 DICER1Q9UPY3 1922 aaKnown RBP6.44□□□□□ -1.38
VPS41-211ENST00000466017 ROBO3Q96MS0 1386 aa6.44□□□□□ -1.38
VPS41-211ENST00000466017 COL2A1P02458 1487 aaPredicted RBP6.43□□□□□ -1.38
VPS41-211ENST00000466017 RAD17O75943 681 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 NOVP48745 357 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 RCAN1P53805 252 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 AK2P54819 239 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 FCGRTP55899 365 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 GABPAQ06546 454 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 PDE4BQ07343 736 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 TOB2Q14106 344 aaPredicted RBP6.43□□□□□ -1.38
VPS41-211ENST00000466017 PPP2R5BQ15173 497 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 DLGAP5Q15398 846 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 CFAP100Q494V2 611 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 RALYLQ86SE5 291 aaKnown RBP6.43□□□□□ -1.38
VPS41-211ENST00000466017 FAM83AQ86UY5 434 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 KIAA0825Q8IV33 1275 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 GPC2Q8N158 579 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 IGDCC4Q8TDY8 1250 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 ESR2Q92731 530 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 WDR89Q96FK6 387 aaPredicted RBP6.43□□□□□ -1.38
VPS41-211ENST00000466017 TMX3Q96JJ7 454 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 PRMT6Q96LA8 375 aaPredicted RBP6.43□□□□□ -1.38
VPS41-211ENST00000466017 RUSC1Q9BVN2 902 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 MXD3Q9BW11 206 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 MCM9Q9NXL9 1143 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 SWAP70Q9UH65 585 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 TAF6LQ9Y6J9 622 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 SBF1O95248 1867 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 ATRNL1Q5VV63 1379 aa6.43□□□□□ -1.38
VPS41-211ENST00000466017 COL4A5P29400 1685 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 MINDY4BA8MYZ0 360 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 F8W031 263 aaPredicted RBP6.42□□□□□ -1.38
VPS41-211ENST00000466017 MAOBP27338 520 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 DDIT3P35638 169 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 TAGLNQ01995 201 aaKnown RBP6.42□□□□□ -1.38
VPS41-211ENST00000466017 Q6ZUG5 572 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 C16orf86Q6ZW13 317 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 SGMS1Q86VZ5 419 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 DGKHQ86XP1 1220 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 TBC1D10CQ8IV04 446 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 FAM151AQ8WW52 585 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 CCDC17Q96LX7 622 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 MAP3K14Q99558 947 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 LLPHQ9BRT6 129 aaKnown RBP6.42□□□□□ -1.38
VPS41-211ENST00000466017 UPF3BQ9BZI7 483 aaKnown RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms