RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	CERS3	Q8IU89	383 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ASIC4	Q96FT7	647 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	TRERF1	Q96PN7	1200 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CRBN	Q96SW2	442 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	SEZ6L	Q9BYH1	1024 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	BCL11A	Q9H165	835 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	IGFLR1	Q9H665	355 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CYP39A1	Q9NYL5	469 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	HDAC5	Q9UQL6	1122 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CTDP1	Q9Y5B0	961 aa	Predicted RBP	10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	NLRC5	Q86WI3	1866 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	WDR87	Q6ZQQ6	2873 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	TMEM232	C9JQI7	657 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651		H3BNC9	293 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	GRM6	O15303	877 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	PRDM1	O75626	825 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CKB	P12277	381 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	SELP	P16109	830 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ID4	P47928	161 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	HTRA4	P83105	476 aa	Predicted RBP	10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	BFSP2	Q13515	415 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	TRIM71	Q2Q1W2	868 aa	Known RBP	10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	NFRKB	Q6P4R8	1299 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	NSMF	Q6X4W1	530 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	MYOCD	Q8IZQ8	938 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	MORC4	Q8TE76	937 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	KAT2B	Q92831	832 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	IRF7	Q92985	503 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	DNAJC2	Q99543	621 aa	Known RBP	10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	FSD1	Q9BTV5	496 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	UPF3B	Q9BZI7	483 aa	Known RBP	10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	NSUN3	Q9H649	340 aa	Known RBP	10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	NYAP2	Q9P242	653 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	FBXO40	Q9UH90	709 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	MICAL3	Q7RTP6	2002 aa		10.34	□□□□□ -0.75
NIF3L1-206	ENST00000416651	VPS13A	Q96RL7	3174 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	LOC100996750	A0A140TA64	210 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	RBM47	A0AV96	593 aa	Known RBP	10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	UPP2	O95045	317 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	LINC00271	P0C7V0	271 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	TRIM27	P14373	513 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	RARS	P54136	660 aa	Known RBP	10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	RBM10	P98175	930 aa	Known RBP	10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	BAAT	Q14032	418 aa	Predicted RBP	10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	ZNF618	Q5T7W0	954 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	AACS	Q86V21	672 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	SUGP1	Q8IWZ8	645 aa	Known RBP	10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	TMEM192	Q8IY95	271 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	TRMT2A	Q8IZ69	625 aa	Known RBP	10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	DBF4B	Q8NFT6	615 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	CEP95	Q96GE4	821 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	KRTAP4-6	Q9BYQ5	205 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	IL1RAPL2	Q9NP60	686 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	VTA1	Q9NP79	307 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	NOD1	Q9Y239	953 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	EXOC6B	Q9Y2D4	811 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	NOP58	Q9Y2X3	529 aa	Known RBP	10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	ZFHX4	Q86UP3	3567 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	ZBED9	Q6R2W3	1325 aa		10.33	□□□□□ -0.76
NIF3L1-206	ENST00000416651	ABHD14A-ACY1	A0A1B0GW23	586 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651		A6NJR5	290 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	PROB1	E7EW31	1015 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	IGSF3	O75054	1194 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	ALDH5A1	P51649	535 aa	Predicted RBP	10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	CAMK1	Q14012	370 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	TIGD5	Q53EQ6	642 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	SLFN13	Q68D06	897 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	KCTD1	Q719H9	257 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	NPAS3	Q8IXF0	933 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	TMEM57	Q8N5G2	664 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	AFAP1L1	Q8TED9	768 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	CNTNAP3B	Q96NU0	1288 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	CNTNAP3	Q9BZ76	1288 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	PUS7L	Q9H0K6	701 aa	Known RBP	10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	CLEC1B	Q9P126	229 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	HDAC6	Q9UBN7	1215 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	FEM1B	Q9UK73	627 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	INSL6	Q9Y581	213 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	PCDHGC5	Q9Y5F6	944 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	SLC4A4	Q9Y6R1	1079 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	DNAH14	Q0VDD8	3507 aa		10.32	□□□□□ -0.76
NIF3L1-206	ENST00000416651	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	LOC730098	B7Z3J9	87 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	NFIB	O00712	420 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	BMP3	P12645	472 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	ADD2	P35612	726 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	CPT1A	P50416	773 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	OAZ1	P54368	228 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	RRP1	P56182	461 aa	Known RBP	10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	SMAD4	Q13485	552 aa	Known RBP	10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	IKBKE	Q14164	716 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	PTPRO	Q16827	1216 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	SLC30A10	Q6XR72	485 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	ERMP1	Q7Z2K6	904 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	TRIM46	Q7Z4K8	759 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	FRMD5	Q7Z6J6	570 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	ADGRD2	Q7Z7M1	963 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	FBXO11	Q86XK2	927 aa		10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	KRI1	Q8N9T8	703 aa	Known RBP	10.31	□□□□□ -0.76
NIF3L1-206	ENST00000416651	AFG1L	Q8WV93	481 aa		10.31	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms