RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CD247P20963 164 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 EIF6P56537 245 aaKnown RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 CORO7P57737 925 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 CAP1Q01518 475 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 MVKQ03426 396 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 SSRP1Q08945 709 aaKnown RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 FXNQ16595 210 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 DCAF15Q66K64 600 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 NXNQ6DKJ4 435 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 IGDCC3Q8IVU1 814 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 TCEAL8Q8IYN2 117 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 LINC01356Q8N9X3 169 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 RBBP8NLQ8NC74 664 aaPredicted RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 TMEM52Q8NDY8 209 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 BRF1Q92994 677 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 RUNDC1Q96C34 613 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 PAGR1Q9BTK6 254 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 GBP3Q9H0R5 595 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 MRPS23Q9Y3D9 190 aaKnown RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 ZC3H12DA2A288 527 aaKnown RBP5.16□□□□□ -1.58
HMGB1-204ENST00000399489 FGF10O15520 208 aaPredicted RBP5.16□□□□□ -1.58
HMGB1-204ENST00000399489 SRGAP3O43295 1099 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 CD3EP07766 207 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 CELA3BP08861 270 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 ZNF445P59923 1031 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 VMACQ2NL98 169 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 LARP1BQ659C4 914 aaKnown RBP5.16□□□□□ -1.58
HMGB1-204ENST00000399489 ERAP2Q6P179 960 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 UNC5AQ6ZN44 842 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 SPICE1Q8N0Z3 855 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 PAF1Q8N7H5 531 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 ZSWIM2Q8NEG5 633 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 BORCS6Q96GS4 357 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 PTCHD1Q96NR3 888 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 RTFDC1Q9BY42 306 aaPredicted RBP5.16□□□□□ -1.58
HMGB1-204ENST00000399489 PPCSQ9HAB8 311 aa5.16□□□□□ -1.58
HMGB1-204ENST00000399489 EPB41L4AQ9HCS5 686 aaPredicted RBP5.16□□□□□ -1.58
HMGB1-204ENST00000399489 CCDC163A0A0D9SF12 145 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 OTOL1A6NHN0 477 aaPredicted RBP5.15□□□□□ -1.58
HMGB1-204ENST00000399489 GSG1L2A8MUP6 293 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 SHOXO15266 292 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 DBHP09172 617 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 L1CAMP32004 1257 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 NCKAP1LP55160 1127 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 ZNF200P98182 395 aaPredicted RBP5.15□□□□□ -1.58
HMGB1-204ENST00000399489 MTMR1Q13613 665 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 MORC3Q14149 939 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 FAM102BQ5T8I3 360 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 ST13P5Q8NFI4 369 aaPredicted RBP5.15□□□□□ -1.58
HMGB1-204ENST00000399489 MYRIPQ8NFW9 859 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 FEZF2Q8TBJ5 459 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 ZNF669Q96BR6 464 aaPredicted RBP5.15□□□□□ -1.58
HMGB1-204ENST00000399489 ZDHHC15Q96MV8 337 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 TEPSINQ96N21 525 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 XYLT2Q9H1B5 865 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 NOL6Q9H6R4 1146 aaKnown RBP5.15□□□□□ -1.58
HMGB1-204ENST00000399489 ADAMTS20P59510 1910 aa5.15□□□□□ -1.58
HMGB1-204ENST00000399489 MCCP23508 829 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 ZEB1P37275 1124 aaPredicted RBP5.14□□□□□ -1.59
HMGB1-204ENST00000399489 KCNC1P48547 511 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 PABPC4Q13310 644 aaKnown RBP eCLIP5.14□□□□□ -1.59
HMGB1-204ENST00000399489 MYBPC2Q14324 1141 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 WWC2Q6AWC2 1192 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 PPFIBP1Q86W92 1011 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 DGKHQ86XP1 1220 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 ZDHHC14Q8IZN3 488 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 OR6P1Q8NGX9 317 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 ATL2Q8NHH9 583 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 RNF38Q9H0F5 515 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 ZHX3Q9H4I2 956 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 FAM86C1Q9NVL1 165 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 WHRNQ9P202 907 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 NUDT5Q9UKK9 219 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 MAPRE3Q9UPY8 281 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 ZNF451Q9Y4E5 1061 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 F8W031 263 aaPredicted RBP5.14□□□□□ -1.59
HMGB1-204ENST00000399489 PRPF3O43395 683 aaKnown RBP5.14□□□□□ -1.59
HMGB1-204ENST00000399489 F2P00734 622 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 PPP2R5DQ14738 602 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 MLC1Q15049 377 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 GNPTABQ3T906 1256 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 FAM83BQ5T0W9 1011 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 HEATR6Q6AI08 1181 aaKnown RBP5.14□□□□□ -1.59
HMGB1-204ENST00000399489 NECAB2Q7Z6G3 386 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 MAGEB6Q8N7X4 407 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 NLGN2Q8NFZ4 835 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 SMAD5Q99717 465 aaKnown RBP5.14□□□□□ -1.59
HMGB1-204ENST00000399489 ZNF214Q9UL59 606 aaPredicted RBP5.14□□□□□ -1.59
HMGB1-204ENST00000399489 PMF1-BGLAPU3KQ54 211 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 IRS2Q9Y4H2 1338 aa5.14□□□□□ -1.59
HMGB1-204ENST00000399489 E2F8A0AVK6 867 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 GOLGA6CA6NDK9 693 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 GOLGA6BA6NDN3 693 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 B2RBV5 119 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 PPM1BO75688 479 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 EYA4O95677 639 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 MSL3P1P0C860 447 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 GOLGA6DP0CG33 693 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 NCAM1P13591 858 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 TRAPPC10P48553 1259 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms