RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CYTH3O43739 400 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 GFPT2O94808 682 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 RASA1P20936 1047 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 RCSD1Q6JBY9 416 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 RUFY4Q6ZNE9 571 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 IRX3P78415 501 aaPredicted RBP17.69■□□□□ 0.42
PCDH1-203ENST00000394536 RAD54LQ92698 747 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 SHISA4Q96DD7 197 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 C7orf25Q9BPX7 421 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 VIPAS39Q9H9C1 493 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 CTTNBP2NLQ9P2B4 639 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 GNA14O95837 355 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 ACTN1P12814 892 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 CACNB3P54284 484 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 UBXN2AP68543 259 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 KCNH2Q12809 1159 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 TBC1D10BQ4KMP7 808 aaPredicted RBP17.68■□□□□ 0.42
PCDH1-203ENST00000394536 SPICE1Q8N0Z3 855 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 HDAC9Q9UKV0 1011 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 ATP8A1Q9Y2Q0 1164 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.68■□□□□ 0.42
PCDH1-203ENST00000394536 CALUO43852 315 aaPredicted RBP17.68■□□□□ 0.42
PCDH1-203ENST00000394536 SBK1Q52WX2 424 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 ALS2CLQ60I27 953 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 PLAAQ9Y263 795 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 PVALEFA0A1B0GWK0 134 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 GJC1P36383 396 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 PAIP2Q9BPZ3 127 aaKnown RBP17.68■□□□□ 0.42
PCDH1-203ENST00000394536 AMFRQ9UKV5 643 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 LEMD3Q9Y2U8 911 aa17.68■□□□□ 0.42
PCDH1-203ENST00000394536 MED1Q15648 1581 aaPredicted RBP17.67■□□□□ 0.42
PCDH1-203ENST00000394536 USP17L10C9JJH3 530 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 EXOC3O60645 756 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 KLRC1P26715 233 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 PRPHP41219 470 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 PDXDC1Q6P996 788 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 KIAA0825Q8IV33 1275 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 SERPINB13Q9UIV8 391 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 FRMD4BQ9Y2L6 1034 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 POTEFA5A3E0 1075 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 EPHB6O15197 1021 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 LRRN2O75325 713 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 POTEIP0CG38 1075 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 FBXW10Q5XX13 1052 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 POTEGQ6S5H5 508 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 POTEEQ6S8J3 1075 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 DDX42Q86XP3 938 aaKnown RBP eCLIP17.67■□□□□ 0.42
PCDH1-203ENST00000394536 TAOK3Q9H2K8 898 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 SLC37A4O43826 429 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 KIAA0895Q8NCT3 520 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 GLIS3Q8NEA6 775 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 OR2W6PQ8NHA6 318 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 ERGIC2Q96RQ1 377 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 FAM53CQ9NYF3 392 aa17.67■□□□□ 0.42
PCDH1-203ENST00000394536 NOVA2Q9UNW9 492 aaKnown RBP17.67■□□□□ 0.42
PCDH1-203ENST00000394536 CCDC172P0C7W6 258 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 SEC24CP53992 1094 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 DHX9Q08211 1270 aaKnown RBP17.66■□□□□ 0.42
PCDH1-203ENST00000394536 STXBP4Q6ZWJ1 553 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 KSR1Q8IVT5 923 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 ZIM3Q96PE6 472 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 ZMYND12Q9H0C1 365 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 CD209Q9NNX6 404 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 KCNK9Q9NPC2 374 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 KDM3AQ9Y4C1 1321 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 NEFHP12036 1026 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 FAM196AQ6ZSG2 479 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 BHMT2Q9H2M3 363 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 TTLL1O95922 423 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 AMPD2Q01433 879 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 ASPRV1Q53RT3 343 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 NEDD1Q8NHV4 660 aa17.66■□□□□ 0.42
PCDH1-203ENST00000394536 A6NNZ2 444 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 SPOPO43791 374 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 BUB1BO60566 1050 aaPredicted RBP17.65■□□□□ 0.42
PCDH1-203ENST00000394536 AKR1B1P15121 316 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 TUBB8Q3ZCM7 444 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 PNMA8AQ86V59 439 aaPredicted RBP17.65■□□□□ 0.42
PCDH1-203ENST00000394536 MGARPQ8TDB4 240 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 MTMR8Q96EF0 704 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 NUDT12Q9BQG2 462 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 CEP72Q9P209 647 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 BCS1LQ9Y276 419 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 ATP6V0A2Q9Y487 856 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 KDM3BQ7LBC6 1761 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 HOXA13P31271 388 aaPredicted RBP17.65■□□□□ 0.42
PCDH1-203ENST00000394536 IFNAR2P48551 515 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 NPY5RQ15761 445 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 ICE2Q659A1 982 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 PIGOQ8TEQ8 1089 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 TNFRSF25Q93038 417 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 RBM17Q96I25 401 aaKnown RBP17.65■□□□□ 0.42
PCDH1-203ENST00000394536 AFDNP55196 1824 aaKnown RBP17.65■□□□□ 0.42
PCDH1-203ENST00000394536 KLRC4O43908 158 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 AFPP02771 609 aaKnown RBP17.65■□□□□ 0.42
PCDH1-203ENST00000394536 SLFN13Q68D06 897 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 MSL1Q68DK7 614 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 ZNF507Q8TCN5 953 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 GCNT4Q9P109 453 aa17.65■□□□□ 0.42
PCDH1-203ENST00000394536 PGRMC1O00264 195 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms