RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 USP18Q9UMW8 372 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 COL4A3BPQ9Y5P4 624 aa10.07□□□□□ -0.8
LIMCH1-202ENST00000381753 KIAA0754O94854 1291 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 PRDX5P30044 214 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 PRMT2P55345 433 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 DMWDQ09019 674 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 RRN3P2A6NIE6 340 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 CCL23P55773 120 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 LAMC2Q13753 1193 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 RILPL1Q5EBL4 403 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 LMBRD2Q68DH5 695 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 LEKR1Q6ZMV7 388 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 PDCD6IPQ8WUM4 868 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ARNTL2Q8WYA1 636 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ZFP91Q96JP5 570 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 VPS33BQ9H267 617 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 KIF5CO60282 957 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 CAND2O75155 1236 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ERLIN1O75477 346 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 GMNNO75496 209 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ERCC5P28715 1186 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 FBXO22Q8NEZ5 403 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 SELENOOQ9BVL4 669 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ZNF536O15090 1300 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 CXCL11O14625 94 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 CLGNO14967 610 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 CABYRO75952 493 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 SYN1P17600 705 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 RAB30Q15771 203 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 NBPF12Q5TAG4 269 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 SWSAP1Q6NVH7 229 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 TTC23LQ6PF05 361 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 TRIM48Q8IWZ4 208 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 HEXIM2Q96MH2 286 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 CTAGE1Q96RT6 745 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 SHTN1A0MZ66 631 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 RPLP2P05387 115 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ARHGAP44Q17R89 818 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ARL13BQ3SXY8 428 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 GJC2Q5T442 439 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ATRIPQ8WXE1 791 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ASIC4Q96FT7 647 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 ARHGAP9Q9BRR9 750 aa10.06□□□□□ -0.8
LIMCH1-202ENST00000381753 A0A1W2PRG0 241 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 OPLAHO14841 1288 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 PRKAR2AP13861 404 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 SPECC1Q5M775 1068 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 ZC3H15Q8WU90 426 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 GPRC5DQ9NZD1 345 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 CLCA2Q9UQC9 943 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 HMGCRP04035 888 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 MYL4P12829 197 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 ERCC3P19447 782 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 SLC45A4Q5BKX6 768 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 SEL1L2Q5TEA6 688 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 RWDD4Q6NW29 188 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 MADDQ8WXG6 1647 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 OR52Z1P0C646 297 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 MCAMP43121 646 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 NAA30Q147X3 362 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 UBE3CQ15386 1083 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 MAP7D1Q3KQU3 841 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 PPM1LQ5SGD2 360 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 GALNT17Q6IS24 598 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 IFNLR1Q8IU57 520 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 MRPS31Q92665 395 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 PGBD1Q96JS3 809 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 TAF1DQ9H5J8 278 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 AOC2O75106 756 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 CYP2C8P10632 490 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 PDIA3P30101 505 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 CMTR1Q8N1G2 835 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 SH3KBP1Q96B97 665 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 DONSONQ9NYP3 566 aa10.05□□□□□ -0.8
LIMCH1-202ENST00000381753 FOSL2P15408 326 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 KRT76Q01546 638 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 CACNB2Q08289 660 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 HADHQ16836 314 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 DIS3L2Q8IYB7 885 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 RAB42Q8N4Z0 105 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 TBC1D22BQ9NU19 505 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 PCDHB4Q9Y5E5 795 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 PNMA6FA0A0J9YX94 578 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 F5H6K3 240 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 STAT5BP51692 787 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 KLRC3Q07444 240 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 MAP2K5Q13163 448 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 GTF2H3Q13889 308 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 ZNF653Q96CK0 615 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 ACCSQ96QU6 501 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 MIR1-1HGQ9H1L0 117 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 C11orf49Q9H6J7 331 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 SYNGAP1Q96PV0 1343 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 CYP2C19P33261 490 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 AVPR1AP37288 418 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 CCDC122Q5T0U0 273 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 RBM23Q86U06 439 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 FLCNQ8NFG4 579 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 ALKBH8Q96BT7 664 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 NCOA3Q9Y6Q9 1424 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms