RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 H0Y3Z8 333 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 HSPA4LO95757 839 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 GAP43P17677 238 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 MAP3K10Q02779 954 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 YWHAHQ04917 246 aaPredicted RBP14.95□□□□□ -0.02
CSPG4-201ENST00000308508 MRPL28Q13084 256 aaKnown RBP14.95□□□□□ -0.02
CSPG4-201ENST00000308508 ZNF233A6NK53 670 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 POLGP54098 1239 aaPredicted RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 ZNF658Q5TYW1 1059 aaPredicted RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 ACAD11Q709F0 780 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 ENAHQ8N8S7 591 aaPredicted RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 RWDD2AQ9UIY3 292 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 ADAM21Q9UKJ8 722 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 PCDHA13Q9Y5I0 950 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 NCLNQ969V3 563 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 STAMBPL1Q96FJ0 436 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 CLIC6Q96NY7 704 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 FOXP1Q9H334 677 aaPredicted RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 PPARGC1AQ9UBK2 798 aaKnown RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 SOWAHDA6NJG2 315 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 KRT37O76014 449 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 HDLBPQ00341 1268 aaKnown RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 CCNYQ8ND76 341 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 TBC1D22AQ8WUA7 517 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 SPTLC3Q9NUV7 552 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 POLR3EQ9NVU0 708 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 GCNT4Q9P109 453 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 SYNJ2BP-COX16A0A087WUM0 186 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 TESPA1A2RU30 521 aaPredicted RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 TLR3O15455 904 aaKnown RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 TRAPPC10P48553 1259 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 SLC7A5Q01650 507 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 PARP9Q8IXQ6 854 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 P2RX5Q93086 422 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 GJA10Q969M2 543 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 UBN1Q9NPG3 1134 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 COX16Q9P0S2 106 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 PPP1R12AO14974 1030 aaPredicted RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 EFCAB14O75071 495 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 ARL4AP40617 200 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 TGFBRAP1Q8WUH2 860 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 NAF1Q96HR8 494 aaKnown RBP14.94□□□□□ -0.02
CSPG4-201ENST00000308508 NDE1Q9NXR1 346 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 RGS9BPQ6ZS82 235 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 TTLL11Q8NHH1 800 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 MTBPQ96DY7 904 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 ANKRD36BP1Q96IX9 119 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 NEUROG2Q9H2A3 272 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 SMYD3Q9H7B4 428 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 SLC38A10Q9HBR0 1119 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 ZNF711Q9Y462 761 aa14.94□□□□□ -0.02
CSPG4-201ENST00000308508 NDUFA10O95299 355 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 PCP11498 1178 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 TAF1BQ53T94 588 aaPredicted RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 HIPK4Q8NE63 616 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 CATSPER1Q8NEC5 780 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 COG4Q9H9E3 785 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 MRPL11Q9Y3B7 192 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 ACSL3O95573 720 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 TRPC1P48995 793 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 TMPRSS15P98073 1019 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 BEND6Q5SZJ8 279 aaPredicted RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 DDX28Q9NUL7 540 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 CDV3Q9UKY7 258 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 ECM2O94769 699 aaPredicted RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 POLR2MP0CAP2 368 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 ATP2B4P23634 1241 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 PSMC1P62191 440 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 ZC3H12BQ5HYM0 836 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 EPM2AIP1Q7L775 607 aaPredicted RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 LARP4BQ92615 738 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 CALR3Q96L12 384 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 C19orf44Q9H6X5 657 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 CCDC188H7C350 402 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 PMS1P54277 932 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 MORF4L2Q15014 288 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 RARS2Q5T160 578 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 CHCHD3Q9NX63 227 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 NFU1Q9UMS0 254 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 PNMA6EA0A0J9YXQ4 647 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 HLA-DPA1P20036 260 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 RFX1P22670 979 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 LRRC8BQ6P9F7 803 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 DAB1O75553 588 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 PMLP29590 882 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 PSMD7P51665 324 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 IRX1P78414 480 aaPredicted RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 ZNF594Q96JF6 807 aaPredicted RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 ZNF229Q9UJW7 825 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 TRPM2O94759 1503 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 XPAP23025 273 aaPredicted RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 ZAP70P43403 619 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 FKBP3Q00688 224 aaKnown RBP14.93□□□□□ -0.02
CSPG4-201ENST00000308508 FAM47AQ5JRC9 791 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 ODR4Q5SWX8 454 aa14.93□□□□□ -0.02
CSPG4-201ENST00000308508 FTCDO95954 541 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 PAMP19021 973 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 DNAJC24Q6P3W2 148 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 RNF217Q8TC41 542 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 CARMIL3Q8ND23 1372 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms