RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CNOT6LQ96LI5 555 aaKnown RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 THAP9Q9H5L6 903 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 SLC39A2Q9NP94 309 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 SH3GLB2Q9NR46 395 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 ADD3Q9UEY8 706 aaKnown RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 PARP3Q9Y6F1 533 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 RGPD8O14715 1765 aaPredicted RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 PRDX5P30044 214 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 RAPGEF1Q13905 1077 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 SLC39A3Q9BRY0 314 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 RETREG1Q9H6L5 497 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 MKRN1Q9UHC7 482 aaKnown RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 PLEKHG2Q9H7P9 1386 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 TOPAZ1Q8N9V7 1692 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 ZMYND10O75800 440 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 CYP2D6P10635 497 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 FGFR2P21802 821 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 CCNE1P24864 410 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 HMGB2P26583 209 aaKnown RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 PRCPP42785 496 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 HERC4Q5GLZ8 1057 aaPredicted RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 SRBD1Q8N5C6 995 aaKnown RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 MB21D1Q8N884 522 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 IFT81Q8WYA0 676 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 FAM84BQ96KN1 310 aaPredicted RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 PSMB7Q99436 277 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 AASDHPPTQ9NRN7 309 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 ORC4O43929 436 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 N4BP1O75113 896 aaKnown RBP11.43□□□□□ -0.58
LIG1-220ENST00000601091 C8orf74Q6P047 294 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 FAM117BQ6P1L5 589 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 SAAL1Q96ER3 474 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 DYNLL2Q96FJ2 89 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 TMOD2Q9NZR1 351 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 ODF2LQ9ULJ1 636 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 MST1RQ04912 1400 aa11.43□□□□□ -0.58
LIG1-220ENST00000601091 NALCNQ8IZF0 1738 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 TCRBV5S4A2TA0A5A2 114 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 EIF3CLB5ME19 914 aaKnown RBP11.42□□□□□ -0.58
LIG1-220ENST00000601091 EBAG9O00559 213 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 CETN3O15182 167 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 MMEP08473 750 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 FOSL1P15407 271 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 ZBED6P86452 979 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 DPYDQ12882 1025 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 MUM1L1Q5H9M0 696 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 STXBP4Q6ZWJ1 553 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 FLCNQ8NFG4 579 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 CELF1Q92879 486 aaKnown RBP11.42□□□□□ -0.58
LIG1-220ENST00000601091 EIF3CQ99613 913 aaKnown RBP11.42□□□□□ -0.58
LIG1-220ENST00000601091 FAM217BQ9NTX9 383 aaPredicted RBP11.42□□□□□ -0.58
LIG1-220ENST00000601091 ADAM21Q9UKJ8 722 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 LEMD3Q9Y2U8 911 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 SPDYE3A6NKU9 549 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 GCFC2P16383 781 aaKnown RBP11.42□□□□□ -0.58
LIG1-220ENST00000601091 STIP1P31948 543 aaKnown RBP11.42□□□□□ -0.58
LIG1-220ENST00000601091 APLP1P51693 650 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 MFSD14BQ5SR56 506 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 LMBR1Q8WVP7 490 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 RBM17Q96I25 401 aaKnown RBP11.42□□□□□ -0.58
LIG1-220ENST00000601091 PAGR1Q9BTK6 254 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 SEZ6LQ9BYH1 1024 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 GLT8D2Q9H1C3 349 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 TAOK3Q9H2K8 898 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 NLRC4Q9NPP4 1024 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 KCND1Q9NSA2 647 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 HDAC6Q9UBN7 1215 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 A0A0U1RQJ8 604 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 USP17L3A6NCW0 530 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 USP17L4A6NCW7 530 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 RIMBP2O15034 1052 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 MRPS25P82663 173 aaKnown RBP11.42□□□□□ -0.58
LIG1-220ENST00000601091 IFFO1Q0D2I5 559 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 CETN1Q12798 172 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 CFAP58Q5T655 872 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 USP17L1Q7RTZ2 530 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 SPATA21Q7Z572 469 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 CCDC170Q8IYT3 715 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 FAM71BQ8TC56 605 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 HDAC9Q9UKV0 1011 aa11.42□□□□□ -0.58
LIG1-220ENST00000601091 LGALS16A8MUM7 142 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 PECAM1P16284 738 aaPredicted RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 TCP1P17987 556 aaKnown RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 PLCG1P19174 1290 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 BTDP43251 543 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 KCNQ4P56696 695 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 POLR2FP61218 127 aaKnown RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 TOMM20Q15388 145 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 SND1Q7KZF4 910 aaKnown RBP eCLIP11.41□□□□□ -0.58
LIG1-220ENST00000601091 MYOCDQ8IZQ8 938 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 EXOC4Q96A65 974 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 ABCB6Q9NP58 842 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 CEP104O60308 925 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 H2AFXP16104 143 aaPredicted RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 PRPHP41219 470 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 MAGEA10P43363 369 aaPredicted RBP11.41□□□□□ -0.58
LIG1-220ENST00000601091 TNNC1P63316 161 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 VWA3BQ502W6 1294 aa11.41□□□□□ -0.58
LIG1-220ENST00000601091 SFMBT2Q5VUG0 894 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms